Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.28□□□□□ -1.72
PTPN9P43378 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 SNORA60-201ENST00000362396 134 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 Y_RNA.18-201ENST00000362461 102 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 RHOT1P2-201ENST00000366423 333 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 CYCSP45-201ENST00000402289 315 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 HMGB1P17-201ENST00000403495 628 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 MIR1302-8-201ENST00000408342 128 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AL953862.1-201ENST00000423016 168 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 NPM1P34-201ENST00000428821 893 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AL358472.1-201ENST00000431295 329 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 RPS6P12-201ENST00000432491 726 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN9P43378 ELOCP8-201ENST00000439309 332 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 ELOCP15-201ENST00000442090 332 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 RPL39P6-201ENST00000448289 150 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 RPL23AP35-201ENST00000451906 501 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 MTND3P7-201ENST00000474435 343 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 RPL29P14-201ENST00000495837 428 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN9P43378 RNF138P1-201ENST00000502765 546 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC114981.1-201ENST00000503897 678 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 AC006499.2-201ENST00000513470 337 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 RNU6-759P-201ENST00000516740 103 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 IGKV2-38-201ENST00000517443 247 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.28□□□□□ -1.72
PTPN9P43378 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN9P43378 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 OR7K1P-201ENST00000546439 926 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.28□□□□□ -1.72
PTPN9P43378 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.28□□□□□ -1.72
PTPN9P43378 RPL23AP87-202ENST00000573039 466 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC012417.1-201ENST00000582307 1039 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 MIR4637-201ENST00000582405 84 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 MIR5684-201ENST00000585074 65 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AL596327.1-201ENST00000603629 213 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC104662.1-201ENST00000604448 511 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 MIR6716-201ENST00000613413 80 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AL031667.3-201ENST00000620124 655 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC018816.2-201ENST00000621460 353 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 MARK2P15-201ENST00000432204 2186 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.28□□□□□ -1.72
PTPN9P43378 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PTPN9P43378 OR4G11P-202ENST00000642116 1414 ntBASIC4.28□□□□□ -1.72
PTPN9P43378 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.28□□□□□ -1.72
PTPN9P43378 MTND5P24-201ENST00000438892 1767 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 AL513185.3-201ENST00000433335 1300 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 AL139811.1-201ENST00000424779 2299 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTPN9P43378 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
PTPN9P43378 AL031577.2-201ENST00000404133 280 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 RNA5SP39-201ENST00000411245 120 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC069218.2-201ENST00000411665 344 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC004552.1-201ENST00000419089 348 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 RWDD4P2-201ENST00000426392 563 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC4.27□□□□□ -1.73
PTPN9P43378 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 RPL38P1-201ENST00000460914 211 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC010618.1-201ENST00000469924 477 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 RPS26P3-201ENST00000470205 348 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC090543.2-201ENST00000483963 348 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC004057.1-201ENST00000485827 348 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.27□□□□□ -1.73
PTPN9P43378 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
PTPN9P43378 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 MTCYBP37-201ENST00000510642 1133 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 RN7SKP122-201ENST00000515923 296 ntBASIC4.27□□□□□ -1.73
PTPN9P43378 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.27□□□□□ -1.73
PTPN9P43378 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms