Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC068880.4-201ENST00000623082 495 ntBASIC3.34□□□□□ -1.87
SHMT2P34897 U6.105-201ENST00000637379 88 ntBASIC3.34□□□□□ -1.87
SHMT2P34897 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC3.34□□□□□ -1.87
SHMT2P34897 PWAR6-201ENST00000552334 4618 ntBASIC3.34□□□□□ -1.88
SHMT2P34897 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
SHMT2P34897 ZNF33CP-201ENST00000432492 2030 ntBASIC3.34□□□□□ -1.88
SHMT2P34897 AC107081.3-201ENST00000612715 2034 ntBASIC3.34□□□□□ -1.88
SHMT2P34897 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
SHMT2P34897 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
SHMT2P34897 AC032011.1-201ENST00000611703 1549 ntBASIC3.34□□□□□ -1.88
SHMT2P34897 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 RNA5SP72-201ENST00000364442 117 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 RNU6-468P-201ENST00000384003 109 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 RNU6-1151P-201ENST00000384684 107 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.33□□□□□ -1.88
SHMT2P34897 RPL31P45-201ENST00000419532 356 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 RPS15AP40-201ENST00000419621 391 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 GTF2IP23-201ENST00000423746 351 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 DEFB130D-201ENST00000426866 237 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.33□□□□□ -1.88
SHMT2P34897 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
SHMT2P34897 MTCYBP31-201ENST00000438855 1122 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 PRDX3P3-201ENST00000447765 522 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3.33□□□□□ -1.88
SHMT2P34897 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 AP000563.1-201ENST00000490865 758 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 AC016065.2-201ENST00000514530 444 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 PRELID3BP4-201ENST00000515476 571 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 RNU6-202P-201ENST00000515998 96 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 RNU6-416P-201ENST00000516265 103 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 HIGD1AP10-201ENST00000527837 282 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 MTND5P21-201ENST00000531961 522 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC007458.1-201ENST00000542812 373 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AL845331.3-202ENST00000562856 261 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.33□□□□□ -1.88
SHMT2P34897 MIR4789-201ENST00000577469 82 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 MIR3944-201ENST00000581277 108 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC011492.1-201ENST00000600023 315 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AP002906.1-201ENST00000603405 233 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 AC120053.1-201ENST00000607706 736 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 AC093875.1-201ENST00000623688 504 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 MIR4278-201ENST00000636094 69 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 FAM157B-203ENST00000639350 358 ntBASIC3.33□□□□□ -1.88
SHMT2P34897 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.33□□□□□ -1.88
SHMT2P34897 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.33□□□□□ -1.88
SHMT2P34897 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
SHMT2P34897 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 AC004972.1-201ENST00000623934 2209 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.32□□□□□ -1.88
SHMT2P34897 SAGE4P-201ENST00000442271 3381 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 RNU1-75P-201ENST00000347264 129 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 SNORA63.3-201ENST00000362682 132 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 RNU1-33P-201ENST00000364249 162 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 MIR153-1-201ENST00000384914 90 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SHMT2P34897 RNU6-272P-201ENST00000411028 104 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC093578.1-201ENST00000415219 368 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC017079.2-201ENST00000416102 485 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 PAICSP7-201ENST00000419829 962 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC241520.1-201ENST00000422654 1099 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AL009174.1-201ENST00000426577 416 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.32□□□□□ -1.88
SHMT2P34897 AL451062.2-201ENST00000427515 271 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.32□□□□□ -1.88
SHMT2P34897 AP000907.1-201ENST00000428428 510 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC005019.1-201ENST00000436455 431 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC3.32□□□□□ -1.88
SHMT2P34897 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.32□□□□□ -1.88
SHMT2P34897 RPL26P28-201ENST00000451325 435 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 PRSS3P4-201ENST00000453323 162 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 CDC42P1-201ENST00000456658 548 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 RPL21P103-201ENST00000479921 488 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC078817.1-201ENST00000492623 435 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 RPL5P23-201ENST00000496040 868 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.32□□□□□ -1.88
SHMT2P34897 WBP1LP4-201ENST00000505043 344 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.32□□□□□ -1.88
SHMT2P34897 RNU2-58P-201ENST00000516403 183 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 RN7SKP277-201ENST00000516895 283 ntBASIC3.32□□□□□ -1.88
SHMT2P34897 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.32□□□□□ -1.88
SHMT2P34897 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.32□□□□□ -1.88
SHMT2P34897 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.32□□□□□ -1.88
SHMT2P34897 AC006518.1-201ENST00000541449 943 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms