Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RPS29P14-201ENST00000431518 171 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AL353597.2-202ENST00000434901 373 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 AC105399.1-202ENST00000447303 205 ntBASIC5.78□□□□□ -1.48
MSX1P28360 NOP56P2-201ENST00000447491 769 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AL353691.1-201ENST00000451332 387 ntBASIC5.78□□□□□ -1.48
MSX1P28360 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 RN7SL369P-201ENST00000477138 299 ntBASIC5.78□□□□□ -1.48
MSX1P28360 RN7SL326P-201ENST00000477493 296 ntBASIC5.78□□□□□ -1.48
MSX1P28360 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 AC026979.1-201ENST00000492525 396 ntBASIC5.78□□□□□ -1.48
MSX1P28360 CEACAMP10-202ENST00000495431 496 ntBASIC5.78□□□□□ -1.48
MSX1P28360 RPL23AP55-201ENST00000498163 452 ntBASIC5.78□□□□□ -1.48
MSX1P28360 RBBP4P6-201ENST00000508098 202 ntBASIC5.78□□□□□ -1.48
MSX1P28360 ODF1-202ENST00000518835 368 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX1P28360 RNU6-323P-201ENST00000521915 107 ntBASIC5.78□□□□□ -1.48
MSX1P28360 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX1P28360 AC091516.1-201ENST00000549191 703 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AC026371.1-201ENST00000551867 419 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SUB1P3-201ENST00000564581 315 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.78□□□□□ -1.48
MSX1P28360 AC007448.1-201ENST00000582714 234 ntBASIC5.78□□□□□ -1.48
MSX1P28360 MIR4293-201ENST00000584305 78 ntBASIC5.78□□□□□ -1.48
MSX1P28360 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 AL161423.1-201ENST00000613700 262 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AC024255.1-201ENST00000614376 102 ntBASIC5.78□□□□□ -1.48
MSX1P28360 MIR6729-201ENST00000618194 65 ntBASIC5.78□□□□□ -1.48
MSX1P28360 AL138825.1-201ENST00000618587 192 ntBASIC5.78□□□□□ -1.48
MSX1P28360 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.78□□□□□ -1.48
MSX1P28360 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
MSX1P28360 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
MSX1P28360 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.77□□□□□ -1.49
MSX1P28360 AC011369.2-201ENST00000624423 1567 ntBASIC5.77□□□□□ -1.49
MSX1P28360 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
MSX1P28360 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 AC096664.2-201ENST00000411843 406 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AL137014.1-201ENST00000420490 1226 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX1P28360 EZH2P1-201ENST00000431167 291 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AC005094.1-201ENST00000440420 368 ntBASIC5.77□□□□□ -1.49
MSX1P28360 PPIAP20-201ENST00000449839 135 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AC133473.1-201ENST00000455173 299 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AC005008.1-201ENST00000456151 612 ntBASIC5.77□□□□□ -1.49
MSX1P28360 FO393415.2-201ENST00000480085 343 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.77□□□□□ -1.49
MSX1P28360 ZNF519P4-201ENST00000514008 125 ntBASIC5.77□□□□□ -1.49
MSX1P28360 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.77□□□□□ -1.49
MSX1P28360 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
MSX1P28360 HSPE1P20-201ENST00000538133 289 ntBASIC5.77□□□□□ -1.49
MSX1P28360 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX1P28360 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.77□□□□□ -1.49
MSX1P28360 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX1P28360 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC5.77□□□□□ -1.49
MSX1P28360 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 AC009313.2-201ENST00000417893 1941 ntBASIC5.77□□□□□ -1.49
MSX1P28360 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC5.77□□□□□ -1.49
MSX1P28360 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
MSX1P28360 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
MSX1P28360 CASC19-246ENST00000641625 1606 ntBASIC5.77□□□□□ -1.49
MSX1P28360 EIF5AL1-201ENST00000520547 3840 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
MSX1P28360 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.77□□□□□ -1.49
MSX1P28360 EXOC5P1-201ENST00000510543 1969 ntBASIC5.76□□□□□ -1.49
MSX1P28360 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.76□□□□□ -1.49
MSX1P28360 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
MSX1P28360 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 PIGN-207ENST00000586566 3891 ntTSL 5 BASIC5.76□□□□□ -1.49
MSX1P28360 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
MSX1P28360 Y_RNA.214-201ENST00000364201 112 ntBASIC5.76□□□□□ -1.49
MSX1P28360 LCN1P2-201ENST00000372030 223 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms