Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL357520.1-201ENST00000441557 453 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 AC010468.1-201ENST00000461022 817 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 HMGB1P25-201ENST00000468402 607 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 AC100870.1-201ENST00000522035 505 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A3P25940 AL442163.2-201ENST00000553912 710 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 AC009977.1-201ENST00000586015 570 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 AL020991.1-201ENST00000612314 373 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A3P25940 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.28□□□□□ -1.88
COL5A3P25940 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
COL5A3P25940 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL5A3P25940 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
COL5A3P25940 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
COL5A3P25940 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.28□□□□□ -1.88
COL5A3P25940 AL606537.1-201ENST00000607258 2011 ntBASIC3.28□□□□□ -1.88
COL5A3P25940 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A3P25940 TEX41-204ENST00000423031 491 ntTSL 4 BASIC3.27□□□□□ -1.89
COL5A3P25940 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A3P25940 AL356320.1-201ENST00000429616 163 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A3P25940 SNORA9.3-201ENST00000516383 129 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AC008277.2-201ENST00000605196 797 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 CR381653.2-201ENST00000624041 768 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A3P25940 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A3P25940 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A3P25940 AC093311.1-201ENST00000506586 2021 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
COL5A3P25940 MIR3074-201ENST00000384885 81 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 SEPT7P2-202ENST00000398921 823 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AL359511.1-201ENST00000402970 211 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AL590290.1-201ENST00000405336 380 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AL451074.5-201ENST00000415894 435 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 NANOGP5-201ENST00000424456 877 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 RPS6P12-201ENST00000432491 726 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 UBE2D3P1-201ENST00000436669 444 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC092013.1-201ENST00000438795 332 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AC125238.1-201ENST00000448842 249 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 RPS20P22-201ENST00000473700 357 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC106872.2-201ENST00000494303 480 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.27□□□□□ -1.89
COL5A3P25940 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
COL5A3P25940 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC022069.1-201ENST00000582910 658 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.27□□□□□ -1.89
COL5A3P25940 AC010733.2-201ENST00000589496 5702 ntBASIC3.27□□□□□ -1.89
COL5A3P25940 AC095050.2-201ENST00000510748 1458 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AC138915.3-201ENST00000562908 1389 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AC006020.1-201ENST00000420179 1854 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 RNVU1-3-201ENST00000364313 161 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 MIR181A2-201ENST00000384863 110 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 B3GNT2P1-201ENST00000434960 952 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A3P25940 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.26□□□□□ -1.89
COL5A3P25940 AC008716.1-201ENST00000511084 513 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.26□□□□□ -1.89
COL5A3P25940 RNU6-964P-201ENST00000516524 69 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AL355836.1-201ENST00000555951 870 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC3.26□□□□□ -1.89
COL5A3P25940 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.26□□□□□ -1.89
COL5A3P25940 AC098826.3-201ENST00000603823 466 ntBASIC3.26□□□□□ -1.89
COL5A3P25940 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.26□□□□□ -1.89
COL5A3P25940 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A3P25940 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A3P25940 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
COL5A3P25940 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A3P25940 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A3P25940 MIR27B-201ENST00000385129 97 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.25□□□□□ -1.89
COL5A3P25940 AC080125.1-201ENST00000414888 684 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 RPS20P5-201ENST00000434808 360 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A3P25940 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A3P25940 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A3P25940 RNU6-991P-201ENST00000516168 107 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AC068657.1-201ENST00000520807 306 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.25□□□□□ -1.89
COL5A3P25940 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A3P25940 AC009101.1-201ENST00000568135 242 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AL158827.2-201ENST00000602494 330 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.25□□□□□ -1.89
COL5A3P25940 AC092628.2-201ENST00000622492 339 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AP003499.2-201ENST00000624100 483 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 AL691447.3-201ENST00000635020 330 ntBASIC3.25□□□□□ -1.89
COL5A3P25940 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
COL5A3P25940 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
COL5A3P25940 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.25□□□□□ -1.89
COL5A3P25940 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.24□□□□□ -1.89
COL5A3P25940 HMGN2P3-201ENST00000433603 273 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.24□□□□□ -1.89
COL5A3P25940 HMGN2P5-201ENST00000436882 273 ntBASIC3.24□□□□□ -1.89
COL5A3P25940 HMGB1P18-201ENST00000438801 619 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms