Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC021146.3-201ENST00000511911 260 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 RNU6-528P-201ENST00000516926 100 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.3□□□□□ -1.56
HMGB1P09429 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 AP005205.1-201ENST00000563503 508 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC069061.3-201ENST00000582254 823 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 uc_338.18-201ENST00000615451 175 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC002076.2-201ENST00000617362 122 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 AC008443.7-201ENST00000622195 246 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC006065.6-201ENST00000625201 545 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.3□□□□□ -1.56
HMGB1P09429 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 AC009812.4-201ENST00000569134 1805 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC105074.1-201ENST00000623380 3095 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HMGB1P09429 SNORA4.1-201ENST00000364263 144 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 RNU6-1207P-201ENST00000384343 107 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
HMGB1P09429 AL049693.1-201ENST00000402760 611 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AMD1P2-201ENST00000412936 992 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 RPL17P36-201ENST00000420302 549 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 UQCRBP1-201ENST00000421129 336 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 MTND2P9-201ENST00000422293 931 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 OR4K11P-201ENST00000431829 904 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.29□□□□□ -1.56
HMGB1P09429 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 RPL30P9-201ENST00000465586 330 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC104090.1-201ENST00000506341 1171 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 FAM60DP-201ENST00000524174 632 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AC008489.1-201ENST00000524271 483 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 MIR4474-201ENST00000579189 78 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AP001429.1-201ENST00000602568 530 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AL133507.1-201ENST00000605269 557 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 AC024940.4-201ENST00000605507 246 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.29□□□□□ -1.56
HMGB1P09429 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC011330.2-201ENST00000621680 635 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
HMGB1P09429 AC006927.4-201ENST00000639187 543 ntBASIC5.29□□□□□ -1.56
HMGB1P09429 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
HMGB1P09429 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
HMGB1P09429 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
HMGB1P09429 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HMGB1P09429 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HMGB1P09429 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
HMGB1P09429 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
HMGB1P09429 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
HMGB1P09429 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
HMGB1P09429 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
HMGB1P09429 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.28□□□□□ -1.56
HMGB1P09429 AC079741.1-201ENST00000321498 212 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 RNVU1-6-201ENST00000364688 164 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 Y_RNA.548-201ENST00000384656 105 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 MIR659-201ENST00000384963 97 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
HMGB1P09429 ANAPC10P1-201ENST00000395991 556 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 AL356421.1-201ENST00000403255 413 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 HDGFP1-201ENST00000405943 252 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 RPL7AP73-201ENST00000413490 353 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 PDSS1P1-201ENST00000422953 1114 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.28□□□□□ -1.56
HMGB1P09429 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.28□□□□□ -1.56
HMGB1P09429 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC5.28□□□□□ -1.56
HMGB1P09429 SNRPEP4-201ENST00000435815 279 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.28□□□□□ -1.56
HMGB1P09429 AC073264.2-201ENST00000448886 166 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC5.28□□□□□ -1.56
HMGB1P09429 AC104563.1-201ENST00000476147 376 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 RPL7P23-201ENST00000493874 747 ntBASIC5.28□□□□□ -1.56
HMGB1P09429 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.28□□□□□ -1.56
HMGB1P09429 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.28□□□□□ -1.56
HMGB1P09429 LEF1-218ENST00000512172 598 ntTSL 2 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms