Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
COL3A1P02461 MIR448-201ENST00000362131 111 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 RNU1-18P-201ENST00000363062 164 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 MIR183-201ENST00000384958 110 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 snosnR66.1-201ENST00000391095 99 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 USP9YP33-201ENST00000412220 421 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 MTCYBP38-201ENST00000417160 1123 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC068533.1-201ENST00000418542 415 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 AC245054.1-201ENST00000420944 258 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 MTCO2P34-201ENST00000421994 607 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AL049610.1-201ENST00000423374 372 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AP000907.1-201ENST00000428428 510 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 YME1L1P1-201ENST00000429435 297 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 YWHAEP5-201ENST00000431545 765 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.85□□□□□ -1.63
COL3A1P02461 AL121601.2-201ENST00000438019 707 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AL354941.1-201ENST00000438600 464 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC4.85□□□□□ -1.63
COL3A1P02461 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL3A1P02461 PPIAP3-201ENST00000450588 505 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 RPL30P6-201ENST00000475925 342 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC091965.2-201ENST00000512324 613 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 RNU6-528P-201ENST00000516926 100 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.85□□□□□ -1.63
COL3A1P02461 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 AP002963.1-201ENST00000530590 184 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC007458.1-201ENST00000542812 373 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AKIRIN1P1-201ENST00000547384 544 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.85□□□□□ -1.63
COL3A1P02461 MIR4789-201ENST00000577469 82 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 OR2BH1P-201ENST00000608850 864 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.85□□□□□ -1.63
COL3A1P02461 AC008083.4-201ENST00000615076 444 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.85□□□□□ -1.63
COL3A1P02461 RMST_10.1-201ENST00000616309 154 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 AC009237.17-201ENST00000618111 748 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AC015908.5-201ENST00000623289 343 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC4.85□□□□□ -1.63
COL3A1P02461 U6.105-201ENST00000637379 88 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL3A1P02461 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL3A1P02461 AC083843.2-201ENST00000568248 6253 ntBASIC4.85□□□□□ -1.63
COL3A1P02461 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 CR848007.1-201ENST00000442354 1699 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL3A1P02461 Y_RNA.560-201ENST00000384689 102 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 MIR483-201ENST00000385070 76 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AL590084.2-201ENST00000401481 382 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.84□□□□□ -1.63
COL3A1P02461 AC006960.1-201ENST00000419980 153 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.84□□□□□ -1.63
COL3A1P02461 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.84□□□□□ -1.63
COL3A1P02461 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.84□□□□□ -1.63
COL3A1P02461 AL096803.2-201ENST00000450032 677 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.84□□□□□ -1.63
COL3A1P02461 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC4.84□□□□□ -1.63
COL3A1P02461 AC113430.1-201ENST00000506872 718 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AC093281.2-201ENST00000510153 597 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.84□□□□□ -1.63
COL3A1P02461 ADI1P3-201ENST00000549509 470 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.84□□□□□ -1.63
COL3A1P02461 AC015688.2-201ENST00000584523 262 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 VN1R90P-201ENST00000595717 726 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 EIF1P6-201ENST00000600054 334 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 MTCYBP22-201ENST00000603788 447 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 AL031281.1-201ENST00000604049 488 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.84□□□□□ -1.63
COL3A1P02461 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.84□□□□□ -1.63
COL3A1P02461 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL3A1P02461 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.64
COL3A1P02461 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
COL3A1P02461 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.83□□□□□ -1.64
COL3A1P02461 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 SAGE2P-201ENST00000420011 2126 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL3A1P02461 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL3A1P02461 RNU6-252P-201ENST00000363232 107 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 SNORD56.4-201ENST00000363883 71 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 SNORD116.1-201ENST00000365628 92 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.83□□□□□ -1.64
COL3A1P02461 MIR490-201ENST00000384865 128 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 RSL24D1P4-201ENST00000400938 484 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 MTCO1P56-201ENST00000401674 224 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 AL031577.2-201ENST00000404133 280 ntBASIC4.83□□□□□ -1.64
COL3A1P02461 ATF1P1-201ENST00000406040 927 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms