Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL049555.1-201ENST00000562834 1933 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 EOGT-210ENST00000615922 1931 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 RNA5SP391-201ENST00000363456 119 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 MIR195-201ENST00000385194 87 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 RPL36P19-201ENST00000430744 301 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 RPL23AP16-201ENST00000441715 421 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 GEMIN8P3-201ENST00000445417 720 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 BMI1P1-201ENST00000445879 941 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 RPS5P7-201ENST00000456664 608 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC092757.1-201ENST00000467293 467 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC010301.1-201ENST00000473936 355 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 RPL23AP65-201ENST00000475608 468 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC114981.1-201ENST00000503897 678 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC091868.1-201ENST00000508746 304 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 MIR2116-201ENST00000517221 80 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL391156.1-201ENST00000554965 554 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC007224.1-201ENST00000564410 144 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 HNRNPCP4-201ENST00000571636 900 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 HMGB2P1-201ENST00000591146 634 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC068790.6-201ENST00000602558 258 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL136363.2-201ENST00000604173 851 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC015813.4-201ENST00000610469 179 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC024941.1-201ENST00000612250 334 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC231657.1-201ENST00000624313 397 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL392088.2-201ENST00000637607 285 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AL442639.1-201ENST00000625030 1899 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 AC068254.2-201ENST00000623938 3577 ntBASIC4.43□□□□□ -1.7
VPS4AQ9UN37 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.43□□□□□ -1.7
VPS4AQ9UN37 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 MTND4P4-201ENST00000439033 1366 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 MTND5P29-201ENST00000458676 1807 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 SNORD113.2-201ENST00000364166 89 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 SNORA75-201ENST00000384158 137 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 DEFB108C-201ENST00000400154 252 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 VN1R8P-201ENST00000407739 893 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 PGBD4P8-201ENST00000412993 562 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL591848.1-201ENST00000413092 322 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC004022.2-201ENST00000413824 193 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RPS7P13-201ENST00000413955 498 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL365184.2-201ENST00000431139 435 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 MTND5P28-201ENST00000438005 1594 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 UBE2V1P3-201ENST00000439651 417 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 USP9YP29-201ENST00000445112 563 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 VN1R10P-201ENST00000447106 875 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC079168.2-201ENST00000453977 416 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 SNRPGP9-201ENST00000456025 225 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RPS15AP17-201ENST00000470598 390 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RPS4XP15-201ENST00000489210 795 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC108022.1-201ENST00000493466 478 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC005726.1-201ENST00000494679 427 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC090071.1-201ENST00000507713 644 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC4.42□□□□□ -1.7
VPS4AQ9UN37 RNU2-30P-201ENST00000516209 141 ntBASIC4.42□□□□□ -1.7
VPS4AQ9UN37 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 145.5 ms