Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNA5SP309-201ENST00000516670 106 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 IGHV3-32-201ENST00000519182 355 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
VPS28Q9UK41 AL133457.1-201ENST00000564251 987 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 RPL23AP87-202ENST00000573039 466 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 MIR5684-201ENST00000585074 65 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC245036.5-201ENST00000596330 847 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC103881.1-201ENST00000603476 538 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AL451044.1-201ENST00000604867 238 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 AC090246.1-201ENST00000616499 426 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 RNA5SP196-201ENST00000625967 102 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 OR5BE1P-202ENST00000641168 1176 ntBASIC4.2□□□□□ -1.74
VPS28Q9UK41 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
VPS28Q9UK41 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
VPS28Q9UK41 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC008725.1-201ENST00000605123 2263 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 MIR372-201ENST00000362225 67 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 RNU6-1249P-201ENST00000363237 111 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 SNORD35B-201ENST00000363660 87 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 RNA5SP515-201ENST00000364570 118 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 MIR607-201ENST00000385241 96 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL138880.1-201ENST00000405824 642 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 TPT1P2-201ENST00000413105 503 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 RPL7P53-201ENST00000421245 739 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL117339.2-201ENST00000430475 180 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 PTENP1-201ENST00000447117 1215 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 USP9YP34-201ENST00000453983 808 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 RPL5P32-201ENST00000454085 879 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC026410.2-201ENST00000460281 156 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC026412.2-201ENST00000512270 1075 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC109445.1-201ENST00000512356 383 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL139174.1-201ENST00000531489 886 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 OR4K7P-201ENST00000580232 945 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 MIR4637-201ENST00000582405 84 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 AC064801.1-201ENST00000612025 407 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AL359715.5-201ENST00000623431 443 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 AP001002.2-201ENST00000625137 386 ntBASIC4.19□□□□□ -1.74
VPS28Q9UK41 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
VPS28Q9UK41 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
VPS28Q9UK41 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
VPS28Q9UK41 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
VPS28Q9UK41 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 Y_RNA.192-201ENST00000363977 102 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 RNU6-878P-201ENST00000384578 110 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 RNU6-1242P-201ENST00000391052 103 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 ANAPC10P1-201ENST00000395991 556 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 TAF9BP1-201ENST00000396646 746 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 OFD1P3Y-201ENST00000453312 783 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 MTND1P16-201ENST00000465177 898 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC087312.1-201ENST00000471411 480 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 RPL31P13-201ENST00000484151 370 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 WBP1LP4-201ENST00000505043 344 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 RNU6-311P-201ENST00000516224 102 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.18□□□□□ -1.74
VPS28Q9UK41 OR8R1P-201ENST00000543943 764 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 EEF1B2P4-201ENST00000551398 348 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 HSPE1P3-201ENST00000559254 309 ntBASIC4.18□□□□□ -1.74
VPS28Q9UK41 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms