Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 NBEAP1-201ENST00000554452 979 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 GNRHR2P1-201ENST00000555315 631 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC113368.1-201ENST00000603736 382 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL391497.1-201ENST00000608671 547 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC005332.6-201ENST00000613178 446 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC109809.1-201ENST00000619665 545 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC073348.1-201ENST00000623002 331 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC009452.1-201ENST00000640823 606 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC117529.2-201ENST00000512159 2068 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP52-201ENST00000362448 134 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNU6-921P-201ENST00000384361 107 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 U8.11-201ENST00000384699 133 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 U8.12-201ENST00000384701 133 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 MIR649-201ENST00000384843 97 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP239-201ENST00000410218 129 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC093578.1-201ENST00000415219 368 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC092634.6-201ENST00000418558 192 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC092647.1-201ENST00000420654 287 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC096632.1-201ENST00000427395 310 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 NANOGP10-201ENST00000453325 895 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 U8.18-201ENST00000459285 133 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC087879.1-201ENST00000474343 374 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RN7SKP31-201ENST00000516354 278 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNU1-95P-201ENST00000516357 160 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNU1-128P-201ENST00000516704 160 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RNU6-1261P-201ENST00000517194 104 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC026403.1-201ENST00000518938 295 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AP001189.2-201ENST00000527320 189 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC007424.1-203ENST00000554613 687 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 MTATP6P24-201ENST00000576835 677 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC025946.2-201ENST00000603398 234 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC093424.1-201ENST00000604999 338 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC107952.2-201ENST00000606048 486 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC007349.4-201ENST00000608114 532 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC107075.1-201ENST00000613695 314 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AC098679.5-201ENST00000624394 571 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AL034408.1-202ENST00000636088 415 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AF001550.2-201ENST00000636643 217 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AL773545.4-201ENST00000637262 310 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AL513478.4-201ENST00000641636 310 ntBASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC3Q9BQI4 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 ELL2P4-201ENST00000446870 1376 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 MIR448-201ENST00000362131 111 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP119-201ENST00000362715 117 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 RNU6-621P-201ENST00000364752 109 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 Y_RNA.333-201ENST00000365274 102 ntBASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC3Q9BQI4 MIR3074-201ENST00000384885 81 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms