Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC093510.2-201ENST00000562820 896 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 XIAPP1-201ENST00000603162 600 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 MTND2P41-201ENST00000637599 773 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AL732372.2-225ENST00000642124 456 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 SGO1P1-201ENST00000603525 1447 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS39Q96JC1 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS39Q96JC1 OR4A15-201ENST00000314706 1035 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 RNA5SP283-201ENST00000365604 119 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 MIR16-1-201ENST00000385271 89 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 GXYLT1P1-201ENST00000446657 490 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 AL096803.2-201ENST00000450032 677 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 UBDP1-202ENST00000457888 382 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 AC103987.1-201ENST00000473394 348 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 RN7SL132P-201ENST00000478131 296 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 AC021146.1-201ENST00000511202 716 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 TRAV15-201ENST00000556680 249 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 CYP2C60P-201ENST00000566088 139 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 MIR4738-201ENST00000579134 87 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 AL109653.1-201ENST00000603091 248 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 AP005229.2-201ENST00000609980 697 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 AP000553.6-201ENST00000641242 118 ntBASIC3.67□□□□□ -1.82
VPS39Q96JC1 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS39Q96JC1 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.67□□□□□ -1.82
VPS39Q96JC1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC005183.1-201ENST00000603687 1979 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 RNU6-730P-201ENST00000383954 104 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 RNU6-821P-201ENST00000390995 107 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL121978.1-201ENST00000402778 359 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 LIPT1P1-201ENST00000415870 1186 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AIMP1P1-201ENST00000418670 937 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL591419.1-201ENST00000427423 339 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL645931.1-201ENST00000439737 410 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL158053.1-201ENST00000441503 453 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC010655.1-201ENST00000449336 292 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 ARPC3P2-201ENST00000457786 533 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 NAP1L1P3-201ENST00000462291 880 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 RPL21P18-201ENST00000469899 480 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 SETP6-201ENST00000479329 568 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC068587.1-201ENST00000483613 781 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 RPS3AP50-201ENST00000487064 803 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC112198.4-201ENST00000515450 351 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AP000926.4-201ENST00000527351 454 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC087481.2-201ENST00000565492 330 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC087499.8-201ENST00000578406 226 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 MIR4286-201ENST00000580651 93 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC053481.4-201ENST00000583164 216 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC005014.3-201ENST00000605985 190 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC120053.1-201ENST00000607706 736 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 AC018755.4-201ENST00000619715 454 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VPS39Q96JC1 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.66□□□□□ -1.82
VPS39Q96JC1 AL645568.2-201ENST00000432815 1337 ntBASIC3.66□□□□□ -1.82
VPS39Q96JC1 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 473.1 ms