Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C1DP2-201ENST00000418167 426 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 BTF3L4P3-201ENST00000418879 476 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AL158073.1-201ENST00000426848 1104 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 COX6CP13-201ENST00000428703 226 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 RPS5P7-201ENST00000456664 608 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC092757.1-201ENST00000467293 467 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 RPL12P20-201ENST00000475538 479 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.94□□□□□ -1.62
USP39Q53GS9 LRRC34P2-201ENST00000514850 553 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC125611.2-201ENST00000551907 647 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.94□□□□□ -1.62
USP39Q53GS9 RPS3AP23-202ENST00000574601 686 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC4.94□□□□□ -1.62
USP39Q53GS9 MIR4715-201ENST00000584117 79 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AP001429.1-201ENST00000602568 530 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AL162730.1-201ENST00000605734 292 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC103710.1-201ENST00000610003 901 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 ATE1-AS1-202ENST00000636460 506 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 THAP12P5-201ENST00000405864 2275 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AL031985.3-201ENST00000565390 2449 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 FRG1BP-201ENST00000278882 761 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 FRG1CP-201ENST00000358464 769 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP39Q53GS9 RNU6-839P-201ENST00000363347 108 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 RN7SKP227-201ENST00000364445 330 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.326-201ENST00000365176 113 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP39Q53GS9 RNU6-1227P-201ENST00000383981 107 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP39Q53GS9 SNORA11C-201ENST00000408532 129 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 CYP1D1P-201ENST00000416662 1433 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 SKP1P3-201ENST00000429280 487 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC016831.4-201ENST00000438302 307 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AL831737.1-201ENST00000441288 271 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 ARL2BPP10-201ENST00000446487 531 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC010733.1-201ENST00000451515 401 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 snoU109.1-201ENST00000459339 135 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 RPL23AP56-201ENST00000460778 453 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AP000942.1-201ENST00000463969 747 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC112206.1-201ENST00000468416 477 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC087312.1-201ENST00000471411 480 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 SNORA18.6-201ENST00000516792 115 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC012339.2-201ENST00000523996 453 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 MTND1P35-201ENST00000526739 508 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 MIR5697-201ENST00000578045 78 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 MIR4795-201ENST00000584182 89 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.93□□□□□ -1.62
USP39Q53GS9 BNIP3P8-201ENST00000597863 560 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AL596327.1-201ENST00000603629 213 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC010200.2-201ENST00000605098 235 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.812-201ENST00000610788 101 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC116447.1-201ENST00000613153 453 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.784-201ENST00000613803 101 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP39Q53GS9 AP001506.1-201ENST00000615444 211 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.787-201ENST00000616522 101 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.780-201ENST00000617336 101 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 Y_RNA.801-201ENST00000619005 101 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC015871.5-202ENST00000623252 701 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC068880.5-201ENST00000624331 290 ntBASIC4.93□□□□□ -1.62
USP39Q53GS9 AC079228.1-201ENST00000624774 1049 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms