Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MIR1284-201ENST00000408337 120 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 RPS25P9-201ENST00000435591 252 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MTCYBP3-201ENST00000445588 1137 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AL451050.1-201ENST00000450126 415 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC104073.1-201ENST00000451988 151 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 TRGVB-201ENST00000453257 471 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MTCO3P11-201ENST00000455103 774 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC053481.1-201ENST00000467217 306 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC108022.1-201ENST00000493466 478 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MTND1P22-201ENST00000510572 951 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MRPS33P3-201ENST00000513456 322 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 RN7SKP234-201ENST00000517173 224 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 DUXAP2-201ENST00000519198 589 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC091178.1-203ENST00000584586 279 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC007566.2-201ENST00000603642 413 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AP003117.2-201ENST00000606010 545 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC105429.2-201ENST00000610567 517 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AL139418.1-201ENST00000613613 177 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AL391261.4-201ENST00000616012 481 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 uc_338.13-201ENST00000618243 179 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AC092184.1-201ENST00000625042 715 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 MIR4496-201ENST00000635896 61 ntBASIC4.16□□□□□ -1.74
COL28A1Q2UY09 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL28A1Q2UY09 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
COL28A1Q2UY09 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
COL28A1Q2UY09 AL391994.1-201ENST00000254724 282 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 MIR34B-201ENST00000385076 84 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 MIR921-201ENST00000401133 56 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 RPL23AP48-201ENST00000406913 488 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 TPT1P2-201ENST00000413105 503 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC004987.3-201ENST00000413879 771 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC098592.1-201ENST00000419352 333 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 MFSD13B-201ENST00000420133 1290 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 NANOGP6-201ENST00000429190 847 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AL357520.1-201ENST00000441557 453 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 USP9YP10-201ENST00000454868 628 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 DHFRP3-201ENST00000455595 559 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC012158.1-204ENST00000483430 465 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 NCOR1P1-202ENST00000486162 291 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 RPL35P6-201ENST00000490024 372 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC008958.1-201ENST00000511047 682 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 USP9YP5-201ENST00000511770 630 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 FTH1P21-201ENST00000512179 511 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 RNU6-583P-201ENST00000516012 92 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 PAICSP4-201ENST00000517543 1253 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 UBE2NP1-201ENST00000545592 458 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AL512347.1-201ENST00000566420 503 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC068790.5-201ENST00000602741 355 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC006270.3-201ENST00000605967 1036 ntBASIC4.15□□□□□ -1.75
COL28A1Q2UY09 AC008966.2-201ENST00000606157 453 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms