Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5SP167-201ENST00000365461 116 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA1P55317 SNORA9-201ENST00000384215 133 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 RNVU1-14-201ENST00000384770 164 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 MIR181A2-201ENST00000384863 110 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC006028.1-201ENST00000438379 402 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.85□□□□□ -1.95
FOXA1P55317 RSL24D1P2-201ENST00000445584 366 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AL162389.1-201ENST00000449233 177 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA1P55317 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC092451.1-201ENST00000480211 153 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA1P55317 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
FOXA1P55317 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC008885.1-201ENST00000514930 301 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 MTCO1P30-201ENST00000515244 580 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA1P55317 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA1P55317 OR5G4P-201ENST00000525251 760 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC067805.1-201ENST00000559344 470 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC034105.3-201ENST00000565294 442 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.85□□□□□ -1.95
FOXA1P55317 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA1P55317 AC007566.2-201ENST00000603642 413 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC055764.2-201ENST00000610089 670 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC099778.2-201ENST00000610904 211 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC096577.2-201ENST00000611455 153 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC011472.4-201ENST00000615848 491 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC007342.8-201ENST00000623278 678 ntBASIC2.85□□□□□ -1.95
FOXA1P55317 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.85□□□□□ -1.95
FOXA1P55317 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
FOXA1P55317 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
FOXA1P55317 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.85□□□□□ -1.95
FOXA1P55317 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.85□□□□□ -1.95
FOXA1P55317 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA1P55317 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA1P55317 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA1P55317 RNU1-35P-201ENST00000362782 153 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 SNORA27.3-201ENST00000364937 134 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 RN7SKP220-201ENST00000410611 288 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC013404.1-201ENST00000413068 249 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA1P55317 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC2.84□□□□□ -1.95
FOXA1P55317 MTCO1P52-201ENST00000433928 531 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
FOXA1P55317 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA1P55317 PTGES3P5-201ENST00000455109 434 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 RPS20P32-201ENST00000456044 356 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC006445.1-201ENST00000491925 405 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA1P55317 SUMO1P1-201ENST00000497904 306 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC022790.1-201ENST00000522872 204 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC012414.2-201ENST00000559474 187 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC005412.1-201ENST00000580812 1049 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC2.84□□□□□ -1.95
FOXA1P55317 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.84□□□□□ -1.95
FOXA1P55317 MTCO3P22-201ENST00000603219 784 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC090525.3-201ENST00000605601 189 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA1P55317 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.84□□□□□ -1.95
FOXA1P55317 5S_rRNA.12-201ENST00000617631 107 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AL590240.3-201ENST00000621416 943 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.84□□□□□ -1.95
FOXA1P55317 AC091953.5-201ENST00000622919 233 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 AC009039.2-201ENST00000624524 529 ntBASIC2.84□□□□□ -1.95
FOXA1P55317 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.84□□□□□ -1.96
FOXA1P55317 AC021755.1-201ENST00000559747 1447 ntBASIC2.84□□□□□ -1.96
FOXA1P55317 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA1P55317 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA1P55317 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA1P55317 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC2.83□□□□□ -1.96
FOXA1P55317 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA1P55317 AC105402.1-201ENST00000413336 545 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 BMS1P22-201ENST00000414726 313 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 MTND4P11-201ENST00000417020 1058 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA1P55317 AL138799.3-201ENST00000438968 350 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC093156.1-201ENST00000440382 670 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 RPS3AP12-201ENST00000443616 753 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 HMGB1P26-201ENST00000452520 628 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.83□□□□□ -1.96
FOXA1P55317 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA1P55317 RN7SL601P-201ENST00000471221 293 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC107398.1-201ENST00000486904 505 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
FOXA1P55317 AC108157.1-201ENST00000510511 539 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.83□□□□□ -1.96
FOXA1P55317 MIR5004-201ENST00000579078 107 ntBASIC2.83□□□□□ -1.96
FOXA1P55317 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms