Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A4P53420 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A4P53420 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A4P53420 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A4P53420 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A4P53420 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
COL4A4P53420 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A4P53420 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A4P53420 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A4P53420 MTND5P31-201ENST00000419366 1374 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL4A4P53420 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A4P53420 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A4P53420 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
COL4A4P53420 OR13C3-201ENST00000374781 1108 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 RN7SKP285-201ENST00000410137 318 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.29□□□□□ -1.88
COL4A4P53420 OR2AS1P-201ENST00000427827 319 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.29□□□□□ -1.88
COL4A4P53420 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A4P53420 AC010095.1-201ENST00000443543 144 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 MTND2P22-201ENST00000444325 1033 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC069540.1-201ENST00000446320 988 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AL445669.2-201ENST00000454425 421 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 CYCSP20-201ENST00000473154 315 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC021146.5-201ENST00000503544 545 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 VWA8P1-201ENST00000510889 176 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC034244.2-201ENST00000514668 858 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 MTND2P32-201ENST00000521584 1038 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A4P53420 AC091544.4-201ENST00000555268 342 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A4P53420 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A4P53420 PRELID3BP8-201ENST00000604148 295 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC3.29□□□□□ -1.88
COL4A4P53420 AC019080.5-201ENST00000624891 757 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 AC010608.3-201ENST00000625048 527 ntBASIC3.29□□□□□ -1.88
COL4A4P53420 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
COL4A4P53420 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
COL4A4P53420 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A4P53420 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 ELL2P4-201ENST00000446870 1376 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC000403.1-201ENST00000613696 3585 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 FAR1P1-201ENST00000427163 934 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC022018.1-201ENST00000430685 241 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 ARL5AP4-201ENST00000430731 512 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 CETN4P-201ENST00000432407 469 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 MTCO2P3-201ENST00000442543 421 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 ELOCP13-201ENST00000443934 329 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A4P53420 AL139824.2-201ENST00000458731 1095 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 MTCO2P6-201ENST00000463134 685 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 BOLA3P3-201ENST00000505182 232 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC027338.1-201ENST00000514840 825 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.28□□□□□ -1.88
COL4A4P53420 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC010615.3-201ENST00000597319 394 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC124856.1-201ENST00000600819 896 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC013444.2-201ENST00000603317 787 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC009974.1-201ENST00000608881 455 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC016590.3-201ENST00000611171 753 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A4P53420 AC010809.3-201ENST00000621310 641 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC068787.1-201ENST00000623908 691 ntBASIC3.28□□□□□ -1.88
COL4A4P53420 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A4P53420 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.28□□□□□ -1.88
COL4A4P53420 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
COL4A4P53420 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A4P53420 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.28□□□□□ -1.88
COL4A4P53420 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.28□□□□□ -1.89
COL4A4P53420 RNU6-859P-201ENST00000362728 107 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.27□□□□□ -1.89
COL4A4P53420 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
COL4A4P53420 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.27□□□□□ -1.89
COL4A4P53420 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.27□□□□□ -1.89
COL4A4P53420 AL603825.1-201ENST00000438481 80 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A4P53420 RAD1P2-201ENST00000446414 663 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC016696.1-201ENST00000446949 318 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AL513124.1-201ENST00000450410 614 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC108938.1-201ENST00000451204 136 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 HMGN2P7-201ENST00000456186 273 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 AC128713.1-201ENST00000471495 306 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 OR5H3P-201ENST00000502817 919 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 RNA5SP217-201ENST00000515959 91 ntBASIC3.27□□□□□ -1.89
COL4A4P53420 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.27□□□□□ -1.89
COL4A4P53420 AC091057.2-201ENST00000602594 792 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms