Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR7844-201ENST00000616161 122 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 AL138721.1-201ENST00000616756 179 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 C2orf27A-204ENST00000623058 969 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 AC091905.4-201ENST00000623432 202 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 AC127502.3-201ENST00000636170 1206 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
HOXA1P49639 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.69□□□□□ -1.82
HOXA1P49639 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA1P49639 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA1P49639 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
HOXA1P49639 RARSP1-201ENST00000542842 1418 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 AC010928.1-201ENST00000592477 1447 ntBASIC3.69□□□□□ -1.82
HOXA1P49639 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA1P49639 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 ZNF962P-201ENST00000443465 3140 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 PRO1804-201ENST00000623780 2050 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 RNA5SP507-201ENST00000363603 121 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 Y_RNA.359-201ENST00000365498 102 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 RNU6-1226P-201ENST00000384317 107 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 RNU6-171P-201ENST00000384354 107 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 Y_RNA.559-201ENST00000384686 107 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 MIR105-2-201ENST00000385083 81 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC073264.1-201ENST00000411508 416 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 PGBD4P8-201ENST00000412993 562 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 RPL23AP39-201ENST00000415533 405 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 MTCO2P34-201ENST00000421994 607 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL645608.4-201ENST00000423619 154 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL138785.1-201ENST00000425821 331 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 OR2B7P-201ENST00000429302 934 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 AC023347.2-201ENST00000433994 462 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA1P49639 AL356535.1-201ENST00000440335 398 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA1P49639 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 AC073850.1-201ENST00000449243 255 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 SNRPGP9-201ENST00000456025 225 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 HMGN2P7-201ENST00000456186 273 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 MTCO3P2-201ENST00000457365 171 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 CEACAMP4-201ENST00000457676 421 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC097493.1-201ENST00000463958 372 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 RPS15AP17-201ENST00000470598 390 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC074386.1-201ENST00000476560 767 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC006499.5-201ENST00000505037 514 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 GAPDHP56-201ENST00000506031 988 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXA1P49639 RNA5SP446-201ENST00000515955 82 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXA1P49639 IGHVIII-67-4-201ENST00000524281 296 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC087276.1-201ENST00000529659 480 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC022880.1-201ENST00000534017 973 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC008127.2-201ENST00000549925 1075 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 AGGF1P4-201ENST00000568249 801 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 MIR3611-201ENST00000584484 83 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC115286.1-201ENST00000604298 434 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AL049634.3-201ENST00000604968 457 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC128687.1-201ENST00000605304 619 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AP000254.1-201ENST00000609934 520 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC012531.5-201ENST00000611375 151 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 MIR6729-201ENST00000618194 65 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC018816.2-201ENST00000621460 353 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC009878.1-201ENST00000621819 340 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXA1P49639 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 U6.101-201ENST00000637707 76 ntBASIC3.68□□□□□ -1.82
HOXA1P49639 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA1P49639 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA1P49639 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.68□□□□□ -1.82
HOXA1P49639 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA1P49639 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
HOXA1P49639 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms