Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 AC093010.3-201ENST00000570269 15214 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 RN7SKP223-201ENST00000410582 62 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.58□□□□□ -1.84
BRCA1P38398 AL356806.1-201ENST00000422524 916 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 CBX1P4-201ENST00000439415 457 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.58□□□□□ -1.84
BRCA1P38398 VWA8P1-201ENST00000510889 176 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 RN7SKP272-201ENST00000516988 232 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
BRCA1P38398 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 VN1R84P-201ENST00000593697 235 ntBASIC3.58□□□□□ -1.84
BRCA1P38398 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.58□□□□□ -1.84
BRCA1P38398 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.58□□□□□ -1.84
BRCA1P38398 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.57□□□□□ -1.84
BRCA1P38398 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 RPL7P26-201ENST00000333817 754 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 AC009965.2-201ENST00000425328 970 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 AL603825.1-201ENST00000438481 80 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.57□□□□□ -1.84
BRCA1P38398 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.57□□□□□ -1.84
BRCA1P38398 TRBV8-2-201ENST00000475637 270 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 AC021146.7-201ENST00000509604 775 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 RNU6-889P-201ENST00000517189 103 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC3.57□□□□□ -1.84
BRCA1P38398 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.57□□□□□ -1.84
BRCA1P38398 AC007566.2-201ENST00000603642 413 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC3.57□□□□□ -1.84
BRCA1P38398 OR6R2P-201ENST00000609216 300 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 AC000123.2-201ENST00000623124 461 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
BRCA1P38398 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.57□□□□□ -1.84
BRCA1P38398 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 AC012020.1-201ENST00000624541 1728 ntBASIC3.57□□□□□ -1.84
BRCA1P38398 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
BRCA1P38398 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 RNU6-670P-201ENST00000364312 104 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 HSPD1P16-201ENST00000402302 394 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC009963.1-201ENST00000417265 157 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 EIF2S2P4-201ENST00000461070 984 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC111000.2-201ENST00000507775 550 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 SNORD116-26-201ENST00000516006 96 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC067904.2-201ENST00000517322 1283 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC009977.1-201ENST00000586015 570 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC017076.1-201ENST00000607613 578 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 uc_338.1-201ENST00000612113 180 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 AC087190.4-201ENST00000574616 8334 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
BRCA1P38398 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
BRCA1P38398 MIR764-201ENST00000390811 85 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC073464.3-201ENST00000422564 712 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 PPIAP17-201ENST00000438507 471 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 ARL5AP3-201ENST00000439327 386 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC023512.1-201ENST00000444513 499 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC010627.1-201ENST00000503819 1294 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 RNU6-347P-201ENST00000516658 105 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AP001207.2-201ENST00000519490 539 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.56□□□□□ -1.84
BRCA1P38398 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 CYP2C60P-201ENST00000566088 139 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 ADAM3B-201ENST00000569937 840 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.56□□□□□ -1.84
BRCA1P38398 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.56□□□□□ -1.84
BRCA1P38398 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
BRCA1P38398 AL365361.1-201ENST00000566942 3481 ntBASIC3.56□□□□□ -1.84
BRCA1P38398 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.55□□□□□ -1.84
BRCA1P38398 GABRG2-229ENST00000641017 3628 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
BRCA1P38398 Z73965.1-201ENST00000623412 2297 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 RNA5SP502-201ENST00000362694 119 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
BRCA1P38398 MIR196B-201ENST00000384852 84 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 AL138878.1-201ENST00000405131 347 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 RPS24P8-201ENST00000431490 402 ntBASIC3.55□□□□□ -1.84
BRCA1P38398 ISCA1P2-201ENST00000438679 421 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms