Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 PPIAP15-201ENST00000479662 484 ntBASIC3.92□□□□□ -1.78
MSH3P20585 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 FTH1P21-201ENST00000512179 511 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 AC118465.1-201ENST00000513820 1271 ntBASIC3.92□□□□□ -1.78
MSH3P20585 RN7SKP31-201ENST00000516354 278 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AC022790.1-201ENST00000522872 204 ntBASIC3.92□□□□□ -1.78
MSH3P20585 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.92□□□□□ -1.78
MSH3P20585 AC092851.1-201ENST00000535964 478 ntBASIC3.92□□□□□ -1.78
MSH3P20585 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AL161713.1-201ENST00000555538 145 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 GTF2IP8-201ENST00000560687 584 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.92□□□□□ -1.78
MSH3P20585 AL592436.1-201ENST00000605135 558 ntBASIC3.92□□□□□ -1.78
MSH3P20585 HMGB1P50-201ENST00000605814 607 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.92□□□□□ -1.78
MSH3P20585 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 AC243756.2-201ENST00000618406 463 ntBASIC3.92□□□□□ -1.78
MSH3P20585 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 AL136964.1-201ENST00000622038 2990 ntBASIC3.92□□□□□ -1.78
MSH3P20585 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
MSH3P20585 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 FAM35DP-201ENST00000323387 2712 ntBASIC3.91□□□□□ -1.78
MSH3P20585 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
MSH3P20585 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.91□□□□□ -1.78
MSH3P20585 RNA5SP97-201ENST00000365006 84 ntBASIC3.91□□□□□ -1.78
MSH3P20585 RNU5A-2P-201ENST00000384337 116 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AGR3-202ENST00000402239 563 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 PPIAP31-201ENST00000405422 495 ntBASIC3.91□□□□□ -1.78
MSH3P20585 HNRNPDP2-201ENST00000406475 478 ntBASIC3.91□□□□□ -1.78
MSH3P20585 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 LUZP4P1-201ENST00000415420 344 ntBASIC3.91□□□□□ -1.78
MSH3P20585 PTP4A1P5-201ENST00000420305 455 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC093698.1-201ENST00000423843 571 ntBASIC3.91□□□□□ -1.78
MSH3P20585 OR8F1P-201ENST00000425243 930 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 RPL37P1-201ENST00000432310 284 ntBASIC3.91□□□□□ -1.78
MSH3P20585 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 KCTD9P3-201ENST00000434597 1169 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AF228730.2-201ENST00000438784 848 ntBASIC3.91□□□□□ -1.78
MSH3P20585 HMGB1P37-201ENST00000439613 609 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AL034418.1-201ENST00000448675 860 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 AL122001.1-201ENST00000457027 370 ntBASIC3.91□□□□□ -1.78
MSH3P20585 NF1P3-201ENST00000457709 450 ntBASIC3.91□□□□□ -1.78
MSH3P20585 RPL21P11-201ENST00000461458 483 ntBASIC3.91□□□□□ -1.78
MSH3P20585 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AC126121.1-201ENST00000482313 553 ntBASIC3.91□□□□□ -1.78
MSH3P20585 ACTG1P13-201ENST00000486987 1043 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.91□□□□□ -1.78
MSH3P20585 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AC021146.8-201ENST00000507455 733 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AC010486.3-201ENST00000511602 785 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC108064.1-201ENST00000513791 460 ntBASIC3.91□□□□□ -1.78
MSH3P20585 Y_RNA.688-201ENST00000516565 95 ntBASIC3.91□□□□□ -1.78
MSH3P20585 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.91□□□□□ -1.78
MSH3P20585 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC3.91□□□□□ -1.78
MSH3P20585 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.91□□□□□ -1.78
MSH3P20585 MIR4286-201ENST00000580651 93 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC017100.2-201ENST00000584628 355 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC067852.4-201ENST00000590314 478 ntBASIC3.91□□□□□ -1.78
MSH3P20585 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.91□□□□□ -1.78
MSH3P20585 AC008687.2-201ENST00000597865 520 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AL031281.1-201ENST00000604049 488 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC067959.1-201ENST00000604334 379 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AL158042.1-201ENST00000605338 460 ntBASIC3.91□□□□□ -1.78
MSH3P20585 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
MSH3P20585 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.91□□□□□ -1.78
MSH3P20585 AC068620.4-201ENST00000636730 1182 ntBASIC3.91□□□□□ -1.78
MSH3P20585 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms