Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SDC1P18827 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
SDC1P18827 AL122126.1-201ENST00000546905 1318 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC007823.1-201ENST00000569932 1566 ntBASIC3.38□□□□□ -1.87
SDC1P18827 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
SDC1P18827 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SDC1P18827 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC1P18827 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
SDC1P18827 RNU6-115P-201ENST00000364310 107 ntBASIC3.37□□□□□ -1.87
SDC1P18827 RNA5SP51-201ENST00000364750 119 ntBASIC3.37□□□□□ -1.87
SDC1P18827 RNU6-1226P-201ENST00000384317 107 ntBASIC3.37□□□□□ -1.87
SDC1P18827 SNORD3H-201ENST00000384486 214 ntBASIC3.37□□□□□ -1.87
SDC1P18827 Y_RNA.625-201ENST00000411256 107 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 FCF1P2-201ENST00000415284 583 ntBASIC3.37□□□□□ -1.87
SDC1P18827 TEX41-203ENST00000420472 765 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 Z93242.1-201ENST00000427102 353 ntBASIC3.37□□□□□ -1.87
SDC1P18827 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC1P18827 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 PSMA2P3-201ENST00000429685 675 ntBASIC3.37□□□□□ -1.87
SDC1P18827 B3GNT2P1-201ENST00000434960 952 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 RPL29P29-201ENST00000448725 423 ntBASIC3.37□□□□□ -1.87
SDC1P18827 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 AC007967.1-201ENST00000455422 1159 ntBASIC3.37□□□□□ -1.87
SDC1P18827 RNU7-170P-201ENST00000459303 61 ntBASIC3.37□□□□□ -1.87
SDC1P18827 SNORD108-201ENST00000459332 71 ntBASIC3.37□□□□□ -1.87
SDC1P18827 DYNLL1P6-201ENST00000503440 264 ntBASIC3.37□□□□□ -1.87
SDC1P18827 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 NPM1P41-201ENST00000512920 831 ntBASIC3.37□□□□□ -1.87
SDC1P18827 SNORA70.18-201ENST00000516696 98 ntBASIC3.37□□□□□ -1.87
SDC1P18827 RN7SKP60-201ENST00000516985 239 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 HIGD1AP5-201ENST00000529959 259 ntBASIC3.37□□□□□ -1.87
SDC1P18827 OR8L1P-201ENST00000534005 955 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.37□□□□□ -1.87
SDC1P18827 AC074051.3-201ENST00000570238 358 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.37□□□□□ -1.87
SDC1P18827 AC144521.1-201ENST00000607148 956 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC092653.1-201ENST00000608509 531 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AL592295.2-201ENST00000612578 206 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AL713922.2-201ENST00000619384 716 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC109454.4-201ENST00000623411 649 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AP003355.3-201ENST00000623465 114 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC112200.1-201ENST00000625015 234 ntBASIC3.37□□□□□ -1.87
SDC1P18827 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC099654.9-201ENST00000637055 678 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC087821.2-201ENST00000637086 450 ntBASIC3.37□□□□□ -1.87
SDC1P18827 TNPO1P3-201ENST00000436471 2662 ntBASIC3.37□□□□□ -1.87
SDC1P18827 AC000367.1-201ENST00000452711 1766 ntBASIC3.37□□□□□ -1.87
SDC1P18827 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.37□□□□□ -1.87
SDC1P18827 AC117529.2-201ENST00000512159 2068 ntBASIC3.37□□□□□ -1.87
SDC1P18827 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.37□□□□□ -1.87
SDC1P18827 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SDC1P18827 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 SNORD9-201ENST00000362566 104 ntBASIC3.36□□□□□ -1.87
SDC1P18827 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SDC1P18827 VN1R51P-201ENST00000411675 945 ntBASIC3.36□□□□□ -1.87
SDC1P18827 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 AC017079.2-201ENST00000416102 485 ntBASIC3.36□□□□□ -1.87
SDC1P18827 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 DBIP2-201ENST00000419076 262 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 RPL7P2-201ENST00000427639 268 ntBASIC3.36□□□□□ -1.87
SDC1P18827 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC114973.1-201ENST00000429057 632 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 MTCO1P53-201ENST00000441633 699 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.36□□□□□ -1.87
SDC1P18827 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.36□□□□□ -1.87
SDC1P18827 AL357552.1-201ENST00000445254 415 ntBASIC3.36□□□□□ -1.87
SDC1P18827 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 NDUFA5P7-201ENST00000452914 242 ntBASIC3.36□□□□□ -1.87
SDC1P18827 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 HMGN3P1-201ENST00000453847 193 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AP000563.1-201ENST00000490865 758 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC012170.1-201ENST00000495139 359 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC020893.1-201ENST00000502452 580 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 NDUFB9P3-201ENST00000521269 501 ntBASIC3.36□□□□□ -1.87
SDC1P18827 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.36□□□□□ -1.87
SDC1P18827 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC3.36□□□□□ -1.87
SDC1P18827 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.36□□□□□ -1.87
SDC1P18827 MIR5708-201ENST00000579723 85 ntBASIC3.36□□□□□ -1.87
SDC1P18827 SNORD39.3-201ENST00000584451 71 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms