Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC4P09017 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC4P09017 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC017071.1-201ENST00000564407 2204 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC4P09017 RNA5SP391-201ENST00000363456 119 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 RNU2-6P-201ENST00000411404 190 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 LINC01347-201ENST00000417964 355 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AL512661.1-201ENST00000434586 1253 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 MTCYBP31-201ENST00000438855 1122 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AL513321.1-201ENST00000441175 761 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC097499.1-201ENST00000444277 208 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC104978.1-201ENST00000449387 391 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC093663.2-201ENST00000484625 313 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 ACTG1P13-201ENST00000486987 1043 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC4P09017 AL035404.1-201ENST00000497982 568 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 SNX5P1-201ENST00000505757 1041 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC090071.1-201ENST00000507713 644 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 Vault.1-201ENST00000516474 102 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 SNORA76.2-201ENST00000517095 137 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC103833.1-201ENST00000517442 172 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 HAUS1P3-201ENST00000523909 662 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC4P09017 HIGD1AP10-201ENST00000527837 282 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC4P09017 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC005242.1-201ENST00000585658 438 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC006116.7-201ENST00000590141 756 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.34□□□□□ -1.87
HOXC4P09017 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXC4P09017 RNA5SP108-201ENST00000605921 117 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 RMST_8.1-201ENST00000610287 165 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AL356321.1-201ENST00000621360 228 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AP000943.4-201ENST00000622912 357 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AC127502.3-201ENST00000636170 1206 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 AL445984.1-201ENST00000637834 659 ntBASIC3.34□□□□□ -1.87
HOXC4P09017 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.34□□□□□ -1.87
HOXC4P09017 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXC4P09017 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
HOXC4P09017 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
HOXC4P09017 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 RNU6-609P-201ENST00000365459 107 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 MIR142-201ENST00000384835 87 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 MIR153-1-201ENST00000384914 90 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 HMGB1P10-201ENST00000395823 563 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 HMGN1P24-201ENST00000412282 298 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 AL512637.2-201ENST00000431287 1256 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 RPL23AP83-201ENST00000434984 473 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.33□□□□□ -1.88
HOXC4P09017 TXNP1-201ENST00000441872 371 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AL591503.2-201ENST00000442314 1005 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HOXC4P09017 RPL23AP67-201ENST00000465341 474 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC108729.1-201ENST00000487812 947 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 GTF2IP9-201ENST00000502460 301 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC110794.1-201ENST00000505816 425 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC005351.1-201ENST00000511152 786 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.33□□□□□ -1.88
HOXC4P09017 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.33□□□□□ -1.88
HOXC4P09017 RN7SKP234-201ENST00000517173 224 ntBASIC3.33□□□□□ -1.88
HOXC4P09017 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms