Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC004853.1-201ENST00000604902 698 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 AC126177.8-201ENST00000618339 1015 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC090574.1-201ENST00000623186 233 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC005858.4-201ENST00000623191 700 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC015908.5-201ENST00000623289 343 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC074101.1-201ENST00000637861 241 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 AC011493.1-201ENST00000596753 1632 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 AC004076.2-201ENST00000620532 3323 ntBASIC4.41□□□□□ -1.7
HOXA3O43365 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
HOXA3O43365 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
HOXA3O43365 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA3O43365 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.4□□□□□ -1.7
HOXA3O43365 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.4□□□□□ -1.7
HOXA3O43365 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.4□□□□□ -1.7
HOXA3O43365 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.4□□□□□ -1.7
HOXA3O43365 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
HOXA3O43365 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.4□□□□□ -1.7
HOXA3O43365 AC027228.2-201ENST00000567141 2154 ntBASIC4.4□□□□□ -1.7
HOXA3O43365 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
HOXA3O43365 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.4□□□□□ -1.7
HOXA3O43365 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.4□□□□□ -1.7
HOXA3O43365 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
HOXA3O43365 MIR133B-201ENST00000362210 119 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RNU4-79P-201ENST00000362764 141 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 Y_RNA.255-201ENST00000364581 97 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 Y_RNA.460-201ENST00000384255 102 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RNA5SP187-201ENST00000384400 119 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AL133388.1-201ENST00000404509 287 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC127526.1-201ENST00000417526 366 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RPS15AP40-201ENST00000419621 391 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC108075.1-201ENST00000424692 529 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RPS26P47-201ENST00000427219 348 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AL138799.3-201ENST00000438968 350 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 DDX3P2-201ENST00000446138 111 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RPL7P12-201ENST00000446719 750 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AL353691.1-201ENST00000451332 387 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 NANOGP10-201ENST00000453325 895 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 AL356010.1-201ENST00000456364 102 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AL049714.1-201ENST00000466686 347 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC006512.1-201ENST00000468816 291 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RPL7AP6-201ENST00000477943 801 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AL163973.1-201ENST00000484753 577 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 RPS23P1-201ENST00000491662 432 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 NIPA2P2-201ENST00000496376 1083 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC020893.1-201ENST00000502452 580 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 HMGN1P13-201ENST00000505795 138 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA3O43365 IGLVIV-53-201ENST00000520107 367 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC100784.1-201ENST00000522790 310 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC023050.3-201ENST00000541142 333 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC078814.3-201ENST00000553036 491 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXA3O43365 GLUD1P4-201ENST00000590914 418 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 YWHAQP7-201ENST00000603536 658 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC245517.5-201ENST00000611529 162 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC090510.2-201ENST00000617465 629 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 Z95327.2-201ENST00000414579 1873 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HOXA3O43365 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HOXA3O43365 RIOK3P1-201ENST00000418778 1528 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA3O43365 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA3O43365 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA3O43365 AC007938.2-201ENST00000604666 2634 ntBASIC4.4□□□□□ -1.71
HOXA3O43365 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA3O43365 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HOXA3O43365 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HOXA3O43365 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms