Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BX284632.1-201ENST00000478218 541 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 RPL35P6-201ENST00000490024 372 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC023194.1-201ENST00000493084 308 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC009646.1-201ENST00000510455 318 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 ARL2BPP6-201ENST00000512757 439 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC098976.1-201ENST00000513014 541 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 ASNSP1-201ENST00000518311 1939 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 OR5AQ1P-201ENST00000527596 927 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 THAP12P4-201ENST00000528321 2266 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC092490.3-201ENST00000545370 572 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC123904.2-201ENST00000548059 300 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 HMGB1P33-201ENST00000563485 527 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC007363.1-201ENST00000604736 620 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC004853.1-201ENST00000604902 698 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC104458.1-201ENST00000608243 463 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC092954.2-201ENST00000609103 430 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC037198.3-201ENST00000616754 526 ntBASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TRIM39Q9HCM9 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 EIF2AP4-201ENST00000424793 1781 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 SOCS5P3-201ENST00000425115 1576 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 MTND5P33-201ENST00000571250 1450 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 RNY1P12-201ENST00000364251 105 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 RNU1-106P-201ENST00000384382 164 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 SNORA70-201ENST00000384436 135 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 CCNG1P1-201ENST00000406783 885 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 RPS12P5-201ENST00000423449 371 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 VN1R54P-201ENST00000435210 1049 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AL049734.2-201ENST00000441066 616 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 KNOP1P3-201ENST00000446933 426 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 TPT1P13-201ENST00000449760 499 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 MTND1P12-201ENST00000455231 147 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 RN7SL515P-201ENST00000463999 297 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC092989.1-201ENST00000481235 277 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 RPS3AP14-201ENST00000483907 780 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC019235.1-201ENST00000503847 207 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC097173.1-201ENST00000505862 819 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC118273.2-201ENST00000532092 465 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC027369.5-201ENST00000533838 755 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC233702.9-201ENST00000581528 203 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC060771.1-201ENST00000582031 164 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC067852.4-201ENST00000590314 478 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC012507.3-201ENST00000603556 477 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC055876.5-201ENST00000605667 259 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AC006338.1-201ENST00000618453 749 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 AP002799.1-201ENST00000623552 423 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 LRRC77P-213ENST00000637727 880 ntBASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
TRIM39Q9HCM9 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.6
TRIM39Q9HCM9 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.09□□□□□ -1.6
TRIM39Q9HCM9 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
TRIM39Q9HCM9 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 SNURFL-201ENST00000309296 343 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 Y_RNA.88-201ENST00000363029 99 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 RNY4P14-201ENST00000363656 96 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 RN7SKP113-201ENST00000363891 295 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 Y_RNA.256-201ENST00000364594 104 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 RNU6-867P-201ENST00000364956 107 ntBASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
TRIM39Q9HCM9 CALM2P3-201ENST00000400429 449 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms