Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNA5SP399-201ENST00000364003 117 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP387-201ENST00000364226 106 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MIR7-3-201ENST00000384898 110 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MIR506-201ENST00000384998 124 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 SNORA3.3-201ENST00000408712 125 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 RAC1P3-201ENST00000416129 580 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 BOLA3P4-201ENST00000418151 400 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 KRR1P1-201ENST00000419430 803 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MRPS36P1-201ENST00000421291 307 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MOB1AP1-201ENST00000430903 535 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 YWHAZP8-201ENST00000436935 731 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC093155.1-201ENST00000440164 826 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 ELOCP13-201ENST00000443934 329 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 VN1R40P-201ENST00000455196 941 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC108734.3-201ENST00000481241 1165 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC025445.1-201ENST00000502728 300 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 RN7SKP287-201ENST00000516546 266 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 IGKV2-38-201ENST00000517443 247 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 NDUFA5P2-201ENST00000519723 344 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MTND2P26-201ENST00000528255 1029 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC005832.3-201ENST00000537929 631 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC023813.2-201ENST00000564321 469 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC087499.8-201ENST00000578406 226 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MTND3P19-201ENST00000603825 345 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC025588.2-201ENST00000604851 466 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC010680.4-201ENST00000605334 543 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AC069200.1-201ENST00000609511 323 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 AP000770.2-201ENST00000623694 100 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 MKKS-204ENST00000639674 192 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 ZNF33CP-201ENST00000432492 2030 ntBASIC3.82□□□□□ -1.8
CCDC3Q9BQI4 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 SNORA63.1-201ENST00000362493 131 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNU6-492P-201ENST00000363035 104 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNU6-1243P-201ENST00000364028 107 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 SNORD116.1-201ENST00000365628 92 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNU6-441P-201ENST00000384545 106 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNU6-1242P-201ENST00000391052 103 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 SNORA11.1-201ENST00000408133 129 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 HIGD1AP15-201ENST00000416198 280 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RPS12P23-201ENST00000419579 400 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 USP9YP11-201ENST00000427537 717 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC008065.1-201ENST00000428525 348 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC005345.1-201ENST00000431868 217 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC098826.2-201ENST00000452011 651 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RPL21P11-201ENST00000461458 483 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 ACTG1P13-201ENST00000486987 1043 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC104057.1-201ENST00000515547 497 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNA5SP154-201ENST00000516193 111 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 RNU6-1225P-201ENST00000516336 65 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 AP000619.3-201ENST00000535634 1127 ntBASIC3.81□□□□□ -1.8
CCDC3Q9BQI4 YPEL5P3-201ENST00000547227 352 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms