Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RN7SL690P-201ENST00000582087 240 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.96□□□□□ -1.62
USP39Q53GS9 AC123786.2-201ENST00000603459 275 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AP000942.4-201ENST00000604811 241 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL009028.1-201ENST00000604895 802 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AC131238.1-201ENST00000617135 328 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 MIR6853-201ENST00000619642 74 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 BX005214.3-202ENST00000619809 325 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 CR381572.2-201ENST00000624852 397 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 DHX40P1-201ENST00000588725 1412 ntBASIC4.96□□□□□ -1.62
USP39Q53GS9 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
USP39Q53GS9 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USP39Q53GS9 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.96□□□□□ -1.62
USP39Q53GS9 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
USP39Q53GS9 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 Y_RNA.97-201ENST00000363094 102 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 RNU6-619P-201ENST00000365146 108 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 Y_RNA.356-201ENST00000365475 113 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC068538.1-201ENST00000376856 336 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 Y_RNA.573-201ENST00000384763 105 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 RPL23AP29-201ENST00000397284 453 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AL049693.1-201ENST00000402760 611 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 GSTA9P-201ENST00000406231 611 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 RN7SKP106-201ENST00000410832 272 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC114755.2-201ENST00000413520 361 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 SDCBPP3-201ENST00000419629 891 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.95□□□□□ -1.62
USP39Q53GS9 MTCO1P20-201ENST00000425366 358 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AL451074.3-201ENST00000437709 472 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 RPS29P9-201ENST00000440360 171 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC093019.1-201ENST00000443135 252 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AC104306.1-201ENST00000449702 371 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.95□□□□□ -1.62
USP39Q53GS9 PSMC1P13-201ENST00000458195 985 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 RPL38P1-201ENST00000460914 211 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC103987.1-201ENST00000473394 348 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 RPS3AP14-201ENST00000483907 780 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC108078.3-201ENST00000502633 489 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 NDUFB4P2-201ENST00000509515 391 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 SAP18P1-201ENST00000512058 390 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AF235103.2-201ENST00000525753 346 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 LSM3P2-201ENST00000551246 273 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AL133457.1-201ENST00000564251 987 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 MIR4277-201ENST00000578298 84 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 AL020997.2-201ENST00000602607 184 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AL035413.2-201ENST00000604801 525 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 MLECP1-201ENST00000615893 709 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 AC145207.9-201ENST00000623802 325 ntBASIC4.95□□□□□ -1.62
USP39Q53GS9 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
USP39Q53GS9 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
USP39Q53GS9 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP39Q53GS9 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.94□□□□□ -1.62
USP39Q53GS9 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 AC009229.4-201ENST00000623854 1947 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 SNORA63-201ENST00000363450 132 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
USP39Q53GS9 RNU6-1300P-201ENST00000391046 108 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.94□□□□□ -1.62
USP39Q53GS9 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP39Q53GS9 AL354751.2-201ENST00000415471 210 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.94□□□□□ -1.62
USP39Q53GS9 AC073136.2-201ENST00000417282 849 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms