Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 RNU6-251P-201ENST00000363235 104 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 Y_RNA.311-201ENST00000365068 96 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 SNORA9-201ENST00000384215 133 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 RNU6-1226P-201ENST00000384317 107 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 RNU1-13P-201ENST00000384499 162 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MIR200C-201ENST00000384980 68 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 Z98745.1-201ENST00000402553 494 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 UQCRBP1-201ENST00000421129 336 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC069285.2-201ENST00000440210 275 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL590399.6-201ENST00000446396 307 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 ATG12P2-201ENST00000456830 416 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC091564.1-201ENST00000464563 479 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL136126.1-201ENST00000473603 402 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC005726.1-201ENST00000494679 427 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AP001086.1-201ENST00000494882 321 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC010486.2-201ENST00000505572 483 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC104090.1-201ENST00000506341 1171 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 HMGB1P28-201ENST00000507778 552 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MYL12AP1-201ENST00000518490 515 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 OR4R3P-201ENST00000525084 838 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MTATP6P15-201ENST00000527233 835 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 LSM6P2-201ENST00000552208 177 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC010928.3-201ENST00000587712 541 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 BPIFA4P-203ENST00000603168 689 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC073091.2-201ENST00000603205 907 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC025811.1-201ENST00000604312 472 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AP003485.2-201ENST00000623636 610 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC079416.3-201ENST00000624479 549 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC117529.2-201ENST00000512159 2068 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 ZNF542P-204ENST00000482727 1305 ntBASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PDLIM3Q53GG5 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MAPK10-372ENST00000641954 3413 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AC011266.1-201ENST00000624119 3569 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MIR448-201ENST00000362131 111 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 SNORA31-201ENST00000362607 130 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 RNA5SP307-201ENST00000362863 116 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 SNORD113-6-201ENST00000363345 75 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 RNA5SP397-201ENST00000391323 118 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 VN1R8P-201ENST00000407739 893 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MIR1250-201ENST00000408098 113 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 MIR1183-201ENST00000408856 89 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL160275.2-201ENST00000412010 394 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 RAP1BP1-201ENST00000412709 553 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 RSU1P3-201ENST00000412878 835 ntBASIC3.66□□□□□ -1.82
PDLIM3Q53GG5 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms