Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP41Q3LFD5 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
USP41Q3LFD5 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP41Q3LFD5 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP41Q3LFD5 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 RNA5SP306-201ENST00000411087 107 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 RPL7P53-201ENST00000421245 739 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 USP9YP11-201ENST00000427537 717 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 RPL7P34-201ENST00000433316 712 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MTCO2P20-201ENST00000437339 673 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MTND3P1-201ENST00000441336 220 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 snoU13.7-201ENST00000459220 104 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 RPL7P15-201ENST00000461190 712 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 MTND2P14-201ENST00000482139 351 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 RN7SL323P-201ENST00000494712 295 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 WBP1LP4-201ENST00000505043 344 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC005351.1-201ENST00000511152 786 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC109445.1-201ENST00000512356 383 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 RNA5SP179-201ENST00000517284 121 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 HIGD1AP17-201ENST00000554576 276 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC074051.3-201ENST00000570238 358 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AL158042.1-201ENST00000605338 460 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC005332.6-201ENST00000613178 446 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MIR6864-201ENST00000617935 70 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC103858.2-201ENST00000621471 543 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC098679.5-201ENST00000624394 571 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AC079416.3-201ENST00000624479 549 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MIR4278-201ENST00000636094 69 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 MKKS-204ENST00000639674 192 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 FAM35DP-201ENST00000323387 2712 ntBASIC4.27□□□□□ -1.73
USP41Q3LFD5 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.27□□□□□ -1.73
USP41Q3LFD5 AL031985.3-201ENST00000565390 2449 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC107982.1-201ENST00000507171 1300 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP41Q3LFD5 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP41Q3LFD5 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 MIR30B-201ENST00000384850 88 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 ZNF603P-201ENST00000405613 487 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 SNORA57.3-201ENST00000411095 141 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 PGBD4P8-201ENST00000412993 562 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC005345.1-201ENST00000431868 217 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AL358232.1-201ENST00000448030 501 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 RPL7P31-201ENST00000450192 724 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 RPL12P26-201ENST00000452430 487 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 ANKRD26P4-201ENST00000455755 950 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 MTND1P16-201ENST00000465177 898 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC090071.1-201ENST00000507713 644 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
USP41Q3LFD5 RN7SKP31-201ENST00000516354 278 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 PAICSP4-201ENST00000517543 1253 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 DUXAP6-201ENST00000553858 601 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC087465.1-201ENST00000560574 245 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AGGF1P8-201ENST00000562979 1000 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC079171.1-201ENST00000568788 914 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC021171.1-201ENST00000603137 706 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AL353778.1-201ENST00000603149 408 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC025946.2-201ENST00000603398 234 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC025811.1-201ENST00000604312 472 ntBASIC4.26□□□□□ -1.73
USP41Q3LFD5 AC091167.4-201ENST00000605079 184 ntBASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms