Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 uc_338.15-201ENST00000615470 191 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AC090510.2-201ENST00000617465 629 ntBASIC5.69□□□□□ -1.5
SOX4Q06945 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.69□□□□□ -1.5
SOX4Q06945 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
SOX4Q06945 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX4Q06945 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.69□□□□□ -1.5
SOX4Q06945 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
SOX4Q06945 AC092747.4-201ENST00000620519 1861 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 MTND4P14-201ENST00000435799 1354 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SOX4Q06945 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX4Q06945 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
SOX4Q06945 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 Y_RNA.100-201ENST00000363141 102 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 RNY4P16-201ENST00000364768 94 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 RNU6-606P-201ENST00000384721 111 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX4Q06945 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX4Q06945 SNORD37.1-201ENST00000390968 65 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 RNY4P36-201ENST00000391116 96 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 RPL31P52-201ENST00000407532 367 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX4Q06945 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.68□□□□□ -1.5
SOX4Q06945 PRELID3BP11-201ENST00000414230 479 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX4Q06945 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AL133482.1-201ENST00000415988 498 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 RPS15AP12-201ENST00000419498 388 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX4Q06945 AL049734.2-201ENST00000441066 616 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC073415.1-201ENST00000449240 153 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 TCEA1P1-201ENST00000449716 880 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC092647.2-201ENST00000452998 253 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AL645937.3-201ENST00000453647 936 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC006512.1-201ENST00000468816 291 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 PABPC1P3-201ENST00000469174 459 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 VN1R17P-201ENST00000472048 1090 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 SCARNA24.1-201ENST00000516465 137 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 RNU6-410P-201ENST00000517006 107 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.68□□□□□ -1.5
SOX4Q06945 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.68□□□□□ -1.5
SOX4Q06945 OR5BN1P-201ENST00000532955 829 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 MIR3149-201ENST00000584629 83 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC025857.2-201ENST00000602711 238 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AL442067.1-201ENST00000613261 223 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 AC068870.2-201ENST00000620635 389 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SOX4Q06945 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.68□□□□□ -1.5
SOX4Q06945 PANDAR-201ENST00000629595 1506 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 AC007342.5-201ENST00000571340 2142 ntBASIC5.68□□□□□ -1.5
SOX4Q06945 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SOX4Q06945 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SOX4Q06945 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.67□□□□□ -1.5
SOX4Q06945 Y_RNA.197-201ENST00000364004 102 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
SOX4Q06945 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 RNU4-26P-201ENST00000410270 107 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC016769.2-201ENST00000414815 475 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX4Q06945 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX4Q06945 AC099670.2-201ENST00000435130 321 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 RPS3AP52-201ENST00000435639 297 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AP1S2P1-201ENST00000457344 379 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 MTCO3P2-201ENST00000457365 171 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 Y_RNA.635-201ENST00000459041 101 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 RN7SL610P-201ENST00000463845 291 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC012181.1-201ENST00000479895 423 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC011005.3-201ENST00000491624 395 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 MTCO1P29-201ENST00000496868 288 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.67□□□□□ -1.5
SOX4Q06945 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 GLUD1P3-202ENST00000508551 200 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 AC114797.1-201ENST00000514003 728 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 HMGN1P9-201ENST00000515212 298 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 NARSP2-201ENST00000518524 679 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AP002373.2-201ENST00000541631 1060 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms