Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 PDCL2P1-201ENST00000419302 352 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 AL365400.1-201ENST00000431854 640 ntBASIC5.67□□□□□ -1.5
LIG3P49916 TAAR7P-201ENST00000436141 242 ntBASIC5.67□□□□□ -1.5
LIG3P49916 RPS15AP9-201ENST00000439856 381 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AC140076.1-201ENST00000449897 361 ntBASIC5.67□□□□□ -1.5
LIG3P49916 SNORD125-201ENST00000459538 96 ntBASIC5.67□□□□□ -1.5
LIG3P49916 RPL32P9-201ENST00000487963 407 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AC108693.1-201ENST00000496068 432 ntBASIC5.67□□□□□ -1.5
LIG3P49916 RPS17P5-201ENST00000498293 408 ntBASIC5.67□□□□□ -1.5
LIG3P49916 GAPDHP56-201ENST00000506031 988 ntBASIC5.67□□□□□ -1.5
LIG3P49916 MTCO3P9-201ENST00000506989 781 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 AP006245.2-201ENST00000522004 300 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.67□□□□□ -1.5
LIG3P49916 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 AL442663.2-201ENST00000554385 511 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.67□□□□□ -1.5
LIG3P49916 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG3P49916 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.67□□□□□ -1.5
LIG3P49916 PRPF19P1-201ENST00000584766 898 ntBASIC5.67□□□□□ -1.5
LIG3P49916 UBE2L4-201ENST00000587688 464 ntBASIC5.67□□□□□ -1.5
LIG3P49916 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG3P49916 AL589674.2-201ENST00000604304 337 ntBASIC5.67□□□□□ -1.5
LIG3P49916 MIR6768-201ENST00000610734 72 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AC135507.2-201ENST00000612443 309 ntBASIC5.67□□□□□ -1.5
LIG3P49916 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG3P49916 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG3P49916 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.67□□□□□ -1.5
LIG3P49916 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
LIG3P49916 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
LIG3P49916 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.67□□□□□ -1.5
LIG3P49916 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC5.67□□□□□ -1.5
LIG3P49916 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
LIG3P49916 AL672167.1-204ENST00000641875 3017 ntBASIC5.66□□□□□ -1.5
LIG3P49916 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG3P49916 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LIG3P49916 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG3P49916 MTCO1P11-201ENST00000429111 1528 ntBASIC5.66□□□□□ -1.5
LIG3P49916 NACAP2-201ENST00000318548 624 ntBASIC5.66□□□□□ -1.5
LIG3P49916 SNORA51.1-201ENST00000363243 140 ntBASIC5.66□□□□□ -1.5
LIG3P49916 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 MIR1-2-201ENST00000384961 85 ntBASIC5.66□□□□□ -1.5
LIG3P49916 U3.25-201ENST00000391209 220 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AL356432.1-201ENST00000405809 419 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AL358176.3-201ENST00000420757 454 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC092832.1-201ENST00000422934 400 ntBASIC5.66□□□□□ -1.5
LIG3P49916 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 RPL36AP53-201ENST00000432891 316 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC093156.1-201ENST00000440382 670 ntBASIC5.66□□□□□ -1.5
LIG3P49916 RPL7P12-201ENST00000446719 750 ntBASIC5.66□□□□□ -1.5
LIG3P49916 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 AK3P4-201ENST00000504283 583 ntBASIC5.66□□□□□ -1.5
LIG3P49916 TMEM248P1-201ENST00000510579 951 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC098976.1-201ENST00000513014 541 ntBASIC5.66□□□□□ -1.5
LIG3P49916 RNA5SP362-201ENST00000516048 118 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 AC100784.1-201ENST00000522790 310 ntBASIC5.66□□□□□ -1.5
LIG3P49916 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC5.66□□□□□ -1.5
LIG3P49916 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.66□□□□□ -1.5
LIG3P49916 AC137627.1-201ENST00000545761 289 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC092470.1-201ENST00000546187 132 ntBASIC5.66□□□□□ -1.5
LIG3P49916 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 AC124068.1-201ENST00000563131 678 ntBASIC5.66□□□□□ -1.5
LIG3P49916 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.66□□□□□ -1.5
LIG3P49916 MIR1273E-201ENST00000581165 102 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 SSX9-202ENST00000608568 580 ntTSL 4 BASIC5.66□□□□□ -1.5
LIG3P49916 AL132765.2-201ENST00000610812 351 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC233309.1-201ENST00000619522 751 ntBASIC5.66□□□□□ -1.5
LIG3P49916 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC5.66□□□□□ -1.5
LIG3P49916 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.66□□□□□ -1.5
LIG3P49916 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
LIG3P49916 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 AL731566.1-201ENST00000620490 1937 ntBASIC5.66□□□□□ -1.5
LIG3P49916 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
LIG3P49916 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
LIG3P49916 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LIG3P49916 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LIG3P49916 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
LIG3P49916 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LIG3P49916 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.65□□□□□ -1.5
LIG3P49916 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 183.3 ms