Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 RPL23AP20-201ENST00000447965 421 ntBASIC4.78□□□□□ -1.64
MSX2P35548 SNRPGP6-201ENST00000451124 220 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 RNU6-420P-201ENST00000458780 107 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC090142.1-201ENST00000465776 462 ntBASIC4.78□□□□□ -1.64
MSX2P35548 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC108751.2-201ENST00000469993 231 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RPL7P6-201ENST00000480903 738 ntBASIC4.78□□□□□ -1.64
MSX2P35548 RN7SL591P-201ENST00000496150 292 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSX2P35548 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.78□□□□□ -1.64
MSX2P35548 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX2P35548 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AC022432.1-201ENST00000595739 310 ntBASIC4.78□□□□□ -1.64
MSX2P35548 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX2P35548 AC090948.2-201ENST00000607363 564 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC093788.1-201ENST00000609356 927 ntBASIC4.78□□□□□ -1.64
MSX2P35548 MIR6886-201ENST00000619864 61 ntBASIC4.78□□□□□ -1.64
MSX2P35548 AC006504.8-201ENST00000621046 635 ntBASIC4.78□□□□□ -1.64
MSX2P35548 YWHAEP7-203ENST00000622054 312 ntBASIC4.78□□□□□ -1.64
MSX2P35548 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX2P35548 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX2P35548 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 OR11H5P-202ENST00000641612 1325 ntBASIC4.77□□□□□ -1.65
MSX2P35548 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSX2P35548 Y_RNA.86-201ENST00000363020 111 ntBASIC4.77□□□□□ -1.65
MSX2P35548 Y_RNA.159-201ENST00000363674 87 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RNA5SP335-201ENST00000363817 110 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RNU6-282P-201ENST00000365357 103 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RNU6-146P-201ENST00000384602 108 ntBASIC4.77□□□□□ -1.65
MSX2P35548 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSX2P35548 Z97832.1-201ENST00000402490 328 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RN7SKP125-201ENST00000410481 302 ntBASIC4.77□□□□□ -1.65
MSX2P35548 OR2AT2P-201ENST00000413438 905 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX2P35548 AC007394.1-201ENST00000421941 531 ntBASIC4.77□□□□□ -1.65
MSX2P35548 NANOGP6-201ENST00000429190 847 ntBASIC4.77□□□□□ -1.65
MSX2P35548 FABP7P2-201ENST00000429946 379 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RPEP2-201ENST00000432149 701 ntBASIC4.77□□□□□ -1.65
MSX2P35548 BX323845.1-201ENST00000432417 179 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 RPL12P46-201ENST00000436610 195 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 GEMIN8P3-201ENST00000445417 720 ntBASIC4.77□□□□□ -1.65
MSX2P35548 EEF1A1P1-201ENST00000447052 739 ntBASIC4.77□□□□□ -1.65
MSX2P35548 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 AL445665.1-202ENST00000452436 324 ntBASIC4.77□□□□□ -1.65
MSX2P35548 MTND1P12-201ENST00000455231 147 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 AC007998.1-201ENST00000474156 672 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 MTND5P5-201ENST00000503764 376 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 FGF7P4-201ENST00000509595 295 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX2P35548 RNU6-202P-201ENST00000515998 96 ntBASIC4.77□□□□□ -1.65
MSX2P35548 Y_RNA.672-201ENST00000516289 104 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RNU6-941P-201ENST00000516346 108 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 AC012400.1-201ENST00000518452 381 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX2P35548 HMGB1P40-201ENST00000525121 540 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX2P35548 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 HIF1AP1-201ENST00000553642 175 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AL442663.2-201ENST00000554385 511 ntBASIC4.77□□□□□ -1.65
MSX2P35548 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.77□□□□□ -1.65
MSX2P35548 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 AL390726.5-202ENST00000564800 256 ntBASIC4.77□□□□□ -1.65
MSX2P35548 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 AL162413.1-201ENST00000603198 110 ntBASIC4.77□□□□□ -1.65
MSX2P35548 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSX2P35548 AC127024.6-201ENST00000621598 424 ntBASIC4.77□□□□□ -1.65
MSX2P35548 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.77□□□□□ -1.65
MSX2P35548 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
MSX2P35548 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSX2P35548 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 AC107068.1-201ENST00000563286 4218 ntBASIC4.77□□□□□ -1.65
MSX2P35548 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX2P35548 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
MSX2P35548 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms