Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 CBX3P5-201ENST00000552017 521 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 AL132657.2-201ENST00000564417 358 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC120057.2-201ENST00000571520 271 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC3.94□□□□□ -1.78
MSH3P20585 VN1R79P-201ENST00000593540 513 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AL731566.2-201ENST00000618971 317 ntBASIC3.94□□□□□ -1.78
MSH3P20585 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.94□□□□□ -1.78
MSH3P20585 MIR6500-201ENST00000622700 86 ntBASIC3.94□□□□□ -1.78
MSH3P20585 AC068724.3-201ENST00000625906 87 ntBASIC3.94□□□□□ -1.78
MSH3P20585 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
MSH3P20585 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.94□□□□□ -1.78
MSH3P20585 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.94□□□□□ -1.78
MSH3P20585 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.94□□□□□ -1.78
MSH3P20585 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
MSH3P20585 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 IPO8P1-201ENST00000455509 3109 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AP002001.2-201ENST00000529025 1469 ntBASIC3.93□□□□□ -1.78
MSH3P20585 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 Y_RNA.169-201ENST00000363745 96 ntBASIC3.93□□□□□ -1.78
MSH3P20585 RNA5SP283-201ENST00000365604 119 ntBASIC3.93□□□□□ -1.78
MSH3P20585 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH3P20585 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH3P20585 AL139098.1-201ENST00000407291 389 ntBASIC3.93□□□□□ -1.78
MSH3P20585 MIR1183-201ENST00000408856 89 ntBASIC3.93□□□□□ -1.78
MSH3P20585 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AL139421.1-201ENST00000423010 169 ntBASIC3.93□□□□□ -1.78
MSH3P20585 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH3P20585 AC087650.1-201ENST00000431445 468 ntBASIC3.93□□□□□ -1.78
MSH3P20585 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 RPL21P89-201ENST00000444021 467 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH3P20585 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC3.93□□□□□ -1.78
MSH3P20585 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 AC106872.2-201ENST00000494303 480 ntBASIC3.93□□□□□ -1.78
MSH3P20585 RPL5P23-201ENST00000496040 868 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 MTATP6P22-201ENST00000507369 598 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC079395.1-201ENST00000510981 262 ntBASIC3.93□□□□□ -1.78
MSH3P20585 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 RNU6-1225P-201ENST00000516336 65 ntBASIC3.93□□□□□ -1.78
MSH3P20585 MIR2114-201ENST00000516645 80 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 OR8R1P-201ENST00000543943 764 ntBASIC3.93□□□□□ -1.78
MSH3P20585 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 AC091515.1-201ENST00000548110 679 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.93□□□□□ -1.78
MSH3P20585 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.93□□□□□ -1.78
MSH3P20585 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC3.93□□□□□ -1.78
MSH3P20585 AL390838.2-201ENST00000602394 274 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AL606490.9-201ENST00000603331 271 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC091167.4-201ENST00000605079 184 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AL133507.1-201ENST00000605269 557 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC093783.1-201ENST00000612976 329 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC121761.2-201ENST00000617300 689 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AC073348.1-201ENST00000623002 331 ntBASIC3.93□□□□□ -1.78
MSH3P20585 AP000676.3-201ENST00000623299 569 ntBASIC3.93□□□□□ -1.78
MSH3P20585 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 RNA5SP196-201ENST00000625967 102 ntBASIC3.93□□□□□ -1.78
MSH3P20585 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
MSH3P20585 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
MSH3P20585 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
MSH3P20585 SAGE2P-201ENST00000420011 2126 ntBASIC3.92□□□□□ -1.78
MSH3P20585 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 XIAPP3-201ENST00000312918 795 ntBASIC3.92□□□□□ -1.78
MSH3P20585 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
MSH3P20585 RNU6-1066P-201ENST00000363573 105 ntBASIC3.92□□□□□ -1.78
MSH3P20585 RNA5SP399-201ENST00000364003 117 ntBASIC3.92□□□□□ -1.78
MSH3P20585 Y_RNA.408-201ENST00000383987 102 ntBASIC3.92□□□□□ -1.78
MSH3P20585 RNU1-89P-201ENST00000384592 164 ntBASIC3.92□□□□□ -1.78
MSH3P20585 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
MSH3P20585 AL133264.1-201ENST00000407157 562 ntBASIC3.92□□□□□ -1.78
MSH3P20585 RNU6-757P-201ENST00000410334 100 ntBASIC3.92□□□□□ -1.78
MSH3P20585 RN7SKP263-201ENST00000411194 309 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC3.92□□□□□ -1.78
MSH3P20585 TBCAP1-201ENST00000436520 327 ntBASIC3.92□□□□□ -1.78
MSH3P20585 MTND3P1-201ENST00000441336 220 ntBASIC3.92□□□□□ -1.78
MSH3P20585 Z99714.1-201ENST00000450463 807 ntBASIC3.92□□□□□ -1.78
MSH3P20585 AL133217.1-201ENST00000450980 425 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms