Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MIR217-201ENST00000384817 110 ntBASIC3.39□□□□□ -1.87
SDC1P18827 MIR184-201ENST00000384962 84 ntBASIC3.39□□□□□ -1.87
SDC1P18827 Y_RNA.578-201ENST00000390903 88 ntBASIC3.39□□□□□ -1.87
SDC1P18827 MTCO1P56-201ENST00000401674 224 ntBASIC3.39□□□□□ -1.87
SDC1P18827 RN7SKP53-201ENST00000411337 315 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC073264.1-201ENST00000411508 416 ntBASIC3.39□□□□□ -1.87
SDC1P18827 MTND4P3-201ENST00000417829 541 ntBASIC3.39□□□□□ -1.87
SDC1P18827 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC1P18827 RPL31P45-201ENST00000419532 356 ntBASIC3.39□□□□□ -1.87
SDC1P18827 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC1P18827 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC1P18827 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC1P18827 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC1P18827 SNRPGP5-201ENST00000456003 220 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AL136097.1-201ENST00000456945 913 ntBASIC3.39□□□□□ -1.87
SDC1P18827 RN7SL594P-201ENST00000470590 287 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC007537.2-201ENST00000472093 511 ntBASIC3.39□□□□□ -1.87
SDC1P18827 SETP14-201ENST00000497538 873 ntBASIC3.39□□□□□ -1.87
SDC1P18827 CAB39P1-201ENST00000502277 460 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC096571.1-202ENST00000506634 735 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC091163.3-201ENST00000518269 1144 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC1P18827 DEFB130C-202ENST00000530001 230 ntBASIC3.39□□□□□ -1.87
SDC1P18827 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.39□□□□□ -1.87
SDC1P18827 DUXAP6-201ENST00000553858 601 ntBASIC3.39□□□□□ -1.87
SDC1P18827 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC1P18827 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.39□□□□□ -1.87
SDC1P18827 AC022916.3-201ENST00000592961 742 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AL049634.3-201ENST00000604968 457 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC112220.2-201ENST00000605513 533 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC024060.1-201ENST00000607052 494 ntBASIC3.39□□□□□ -1.87
SDC1P18827 RMST_8.1-201ENST00000610287 165 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC104763.3-201ENST00000613765 618 ntBASIC3.39□□□□□ -1.87
SDC1P18827 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC1P18827 AL357559.1-201ENST00000622228 274 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.39□□□□□ -1.87
SDC1P18827 AP003485.1-201ENST00000625093 753 ntBASIC3.39□□□□□ -1.87
SDC1P18827 MIR4496-201ENST00000635896 61 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC068620.4-201ENST00000636730 1182 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC119674.1-207ENST00000641355 633 ntBASIC3.39□□□□□ -1.87
SDC1P18827 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 AC066616.2-201ENST00000559334 1481 ntBASIC3.39□□□□□ -1.87
SDC1P18827 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SDC1P18827 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.39□□□□□ -1.87
SDC1P18827 DCAF13P1-201ENST00000495256 1330 ntBASIC3.39□□□□□ -1.87
SDC1P18827 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.38□□□□□ -1.87
SDC1P18827 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
SDC1P18827 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
SDC1P18827 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SDC1P18827 AP001486.2-201ENST00000561652 5113 ntBASIC3.38□□□□□ -1.87
SDC1P18827 RNU6-707P-201ENST00000364647 95 ntBASIC3.38□□□□□ -1.87
SDC1P18827 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.38□□□□□ -1.87
SDC1P18827 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SDC1P18827 RNU6-925P-201ENST00000384629 104 ntBASIC3.38□□□□□ -1.87
SDC1P18827 MIR124-3-201ENST00000384866 87 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AL079342.2-201ENST00000403367 482 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC069218.2-201ENST00000411665 344 ntBASIC3.38□□□□□ -1.87
SDC1P18827 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC1P18827 AL449283.1-202ENST00000418249 604 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC068533.1-201ENST00000418542 415 ntBASIC3.38□□□□□ -1.87
SDC1P18827 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.38□□□□□ -1.87
SDC1P18827 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 GTF2IP3-201ENST00000433887 494 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.38□□□□□ -1.87
SDC1P18827 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.38□□□□□ -1.87
SDC1P18827 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SDC1P18827 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.38□□□□□ -1.87
SDC1P18827 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 AC004801.2-202ENST00000463559 283 ntBASIC3.38□□□□□ -1.87
SDC1P18827 RN7SL132P-201ENST00000478131 296 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC005726.1-201ENST00000494679 427 ntBASIC3.38□□□□□ -1.87
SDC1P18827 UBE2CP3-201ENST00000502715 450 ntBASIC3.38□□□□□ -1.87
SDC1P18827 TMEM248P1-201ENST00000510579 951 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC1P18827 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 AP001207.2-201ENST00000519490 539 ntBASIC3.38□□□□□ -1.87
SDC1P18827 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 AP000790.1-201ENST00000528891 737 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.38□□□□□ -1.87
SDC1P18827 AL139174.1-201ENST00000531489 886 ntBASIC3.38□□□□□ -1.87
SDC1P18827 OR8K4P-201ENST00000534608 872 ntBASIC3.38□□□□□ -1.87
SDC1P18827 TGIF1P1-201ENST00000558095 802 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.38□□□□□ -1.87
SDC1P18827 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.38□□□□□ -1.87
SDC1P18827 AC107982.3-201ENST00000584957 985 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC091057.3-201ENST00000602684 733 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.38□□□□□ -1.87
SDC1P18827 AL445435.1-201ENST00000604232 665 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AL592148.2-201ENST00000612210 372 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC069209.1-201ENST00000619282 651 ntBASIC3.38□□□□□ -1.87
SDC1P18827 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
SDC1P18827 AL391262.2-201ENST00000622466 494 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC098679.5-201ENST00000624394 571 ntBASIC3.38□□□□□ -1.87
SDC1P18827 AC010608.3-201ENST00000625048 527 ntBASIC3.38□□□□□ -1.87
SDC1P18827 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms