Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VCANP13611 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
VCANP13611 Z99127.3-201ENST00000448158 395 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.78□□□□□ -1.96
VCANP13611 RPL30P9-201ENST00000465586 330 ntBASIC2.78□□□□□ -1.96
VCANP13611 CYCSP20-201ENST00000473154 315 ntBASIC2.78□□□□□ -1.96
VCANP13611 ACTG1P13-201ENST00000486987 1043 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC2.78□□□□□ -1.96
VCANP13611 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC2.78□□□□□ -1.96
VCANP13611 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.78□□□□□ -1.96
VCANP13611 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
VCANP13611 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.96
VCANP13611 AC017071.1-201ENST00000564407 2204 ntBASIC2.78□□□□□ -1.96
VCANP13611 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VCANP13611 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC2.78□□□□□ -1.96
VCANP13611 AC107398.1-201ENST00000486904 505 ntBASIC2.78□□□□□ -1.96
VCANP13611 RN7SL283P-201ENST00000489055 303 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC117522.2-201ENST00000510049 657 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.78□□□□□ -1.96
VCANP13611 RN7SKP234-201ENST00000517173 224 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC010928.3-201ENST00000587712 541 ntBASIC2.78□□□□□ -1.96
VCANP13611 AC015813.4-201ENST00000610469 179 ntBASIC2.78□□□□□ -1.96
VCANP13611 AL136964.1-201ENST00000622038 2990 ntBASIC2.78□□□□□ -1.96
VCANP13611 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC2.78□□□□□ -1.97
VCANP13611 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
VCANP13611 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.97
VCANP13611 MTND5P6-201ENST00000422338 1798 ntBASIC2.77□□□□□ -1.97
VCANP13611 SNORA26.9-201ENST00000391322 122 ntBASIC2.77□□□□□ -1.97
VCANP13611 RNA5SP31-201ENST00000411144 127 ntBASIC2.77□□□□□ -1.97
VCANP13611 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.77□□□□□ -1.97
VCANP13611 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC2.77□□□□□ -1.97
VCANP13611 AC093663.2-201ENST00000484625 313 ntBASIC2.77□□□□□ -1.97
VCANP13611 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC2.77□□□□□ -1.97
VCANP13611 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.77□□□□□ -1.97
VCANP13611 AC104237.2-201ENST00000612456 443 ntBASIC2.77□□□□□ -1.97
VCANP13611 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
VCANP13611 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 GLS-203ENST00000409215 632 ntTSL 4 BASIC2.77□□□□□ -1.97
VCANP13611 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC2.77□□□□□ -1.97
VCANP13611 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.77□□□□□ -1.97
VCANP13611 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 AL359893.1-201ENST00000447628 1580 ntBASIC2.77□□□□□ -1.97
VCANP13611 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC2.77□□□□□ -1.97
VCANP13611 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 RPS26P30-201ENST00000443431 335 ntBASIC2.77□□□□□ -1.97
VCANP13611 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC2.77□□□□□ -1.97
VCANP13611 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VCANP13611 MIR4727-201ENST00000622232 55 ntBASIC2.77□□□□□ -1.97
VCANP13611 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.76□□□□□ -1.97
VCANP13611 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 MIR448-201ENST00000362131 111 ntBASIC2.76□□□□□ -1.97
VCANP13611 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.76□□□□□ -1.97
VCANP13611 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.76□□□□□ -1.97
VCANP13611 MYL12AP1-201ENST00000518490 515 ntBASIC2.76□□□□□ -1.97
VCANP13611 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
VCANP13611 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.76□□□□□ -1.97
VCANP13611 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VCANP13611 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 RNU1-17P-201ENST00000363022 152 ntBASIC2.75□□□□□ -1.97
VCANP13611 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC2.75□□□□□ -1.97
VCANP13611 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 AC068781.1-201ENST00000488231 618 ntBASIC2.75□□□□□ -1.97
VCANP13611 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.75□□□□□ -1.97
VCANP13611 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 MIR613-201ENST00000385248 95 ntBASIC2.75□□□□□ -1.97
VCANP13611 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.75□□□□□ -1.97
VCANP13611 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC2.75□□□□□ -1.97
VCANP13611 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC2.75□□□□□ -1.97
VCANP13611 AC010620.2-201ENST00000600135 313 ntBASIC2.75□□□□□ -1.97
VCANP13611 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VCANP13611 AL139276.1-201ENST00000311910 1001 ntBASIC2.75□□□□□ -1.97
VCANP13611 POLR2J4-204ENST00000418424 324 ntBASIC2.75□□□□□ -1.97
VCANP13611 HNRNPKP5-201ENST00000515300 253 ntBASIC2.75□□□□□ -1.97
VCANP13611 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC2.75□□□□□ -1.97
VCANP13611 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC2.75□□□□□ -1.97
VCANP13611 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms