Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.79□□□□□ -1.8
CLDN3O15551 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.79□□□□□ -1.8
CLDN3O15551 GTF2IP12-201ENST00000456547 356 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 RNU7-170P-201ENST00000459303 61 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CLDN3O15551 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.79□□□□□ -1.8
CLDN3O15551 RNU6-416P-201ENST00000516265 103 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 AP006245.1-201ENST00000522549 120 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC007458.1-201ENST00000542812 373 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.79□□□□□ -1.8
CLDN3O15551 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
CLDN3O15551 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.79□□□□□ -1.8
CLDN3O15551 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.79□□□□□ -1.8
CLDN3O15551 MIR5186-201ENST00000577504 120 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 RN7SL622P-201ENST00000585292 275 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 BNIP3P33-201ENST00000598912 569 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 SNRPGP15-201ENST00000600149 222 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 AL162574.2-201ENST00000614618 657 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 U6.105-201ENST00000637379 88 ntBASIC3.79□□□□□ -1.8
CLDN3O15551 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CLDN3O15551 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.79□□□□□ -1.8
CLDN3O15551 GABPAP-201ENST00000419271 1356 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AL645937.1-201ENST00000641739 1652 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CLDN3O15551 SNORA31-201ENST00000362607 130 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 MIR490-201ENST00000384865 128 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 SNORD65C-201ENST00000390962 71 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AL136116.1-201ENST00000403591 381 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.78□□□□□ -1.8
CLDN3O15551 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 AL159169.1-201ENST00000421119 127 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC244098.2-201ENST00000422068 99 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 OSTCP5-201ENST00000425293 453 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AL009174.1-201ENST00000426577 416 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.78□□□□□ -1.8
CLDN3O15551 AL159987.2-201ENST00000432754 307 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 RPL21P112-201ENST00000434403 463 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 CYCSP43-201ENST00000438233 310 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.78□□□□□ -1.8
CLDN3O15551 PRDX3P3-201ENST00000447765 522 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 RPL26P28-201ENST00000451325 435 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.78□□□□□ -1.8
CLDN3O15551 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.78□□□□□ -1.8
CLDN3O15551 FCF1P3-201ENST00000496394 590 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.78□□□□□ -1.8
CLDN3O15551 BNIP3P38-201ENST00000601117 544 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC098483.2-201ENST00000603158 454 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 Z82195.1-201ENST00000604558 398 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC016542.1-201ENST00000608259 493 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC005156.1-201ENST00000613371 573 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AL355365.1-201ENST00000616480 294 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC012314.7-201ENST00000619693 93 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 AC244100.1-202ENST00000621554 382 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.78□□□□□ -1.8
CLDN3O15551 MIR4278-201ENST00000636094 69 ntBASIC3.78□□□□□ -1.8
CLDN3O15551 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLDN3O15551 SAGE4P-201ENST00000442271 3381 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.77□□□□□ -1.81
CLDN3O15551 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.77□□□□□ -1.81
CLDN3O15551 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.77□□□□□ -1.81
CLDN3O15551 RNU6-609P-201ENST00000365459 107 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 RNU6-1226P-201ENST00000384317 107 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 RNU6-328P-201ENST00000390887 106 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.77□□□□□ -1.81
CLDN3O15551 RN7SKP111-201ENST00000410349 271 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 RNU2-37P-201ENST00000410695 177 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 RPL31P2-201ENST00000413849 377 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 BX664727.1-201ENST00000416024 466 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.77□□□□□ -1.81
CLDN3O15551 MTND2P16-201ENST00000419987 799 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC3.77□□□□□ -1.81
CLDN3O15551 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.77□□□□□ -1.81
CLDN3O15551 AL451062.2-201ENST00000427515 271 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 AC002542.1-201ENST00000440683 193 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.77□□□□□ -1.81
CLDN3O15551 GXYLT1P1-201ENST00000446657 490 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 RPL23AP62-201ENST00000463396 453 ntBASIC3.77□□□□□ -1.81
CLDN3O15551 AC026784.1-201ENST00000507986 352 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms