Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 Y_RNA.559-201ENST00000384686 107 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 U3.30-201ENST00000391308 210 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MIR921-201ENST00000401133 56 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 HMGB1P17-201ENST00000403495 628 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 RPL31P52-201ENST00000407532 367 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 Y_RNA.599-201ENST00000410489 109 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 RNU4-25P-201ENST00000410569 230 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 VDAC1P9-201ENST00000412766 841 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 UBTFL3-201ENST00000418934 1024 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL592447.1-201ENST00000447592 540 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 RPL39P6-201ENST00000448289 150 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC239809.1-201ENST00000450470 217 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL121877.1-201ENST00000453704 622 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC005008.1-201ENST00000456151 612 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 UBTFL6-201ENST00000477929 1024 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC025164.1-201ENST00000496249 478 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC079140.3-201ENST00000511111 550 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 RNA5SP216-201ENST00000516111 123 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MTCYBP20-201ENST00000524239 1129 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC074029.1-201ENST00000552531 1044 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 NF1P5-201ENST00000588287 448 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MIR92B-201ENST00000607575 96 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AP000254.1-201ENST00000609934 520 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC023043.4-201ENST00000612081 449 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 DLEU2_1.1-201ENST00000612089 120 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 DLEU2_1.2-201ENST00000614667 120 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL161637.1-201ENST00000622380 412 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL356121.2-201ENST00000624715 780 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC027290.2-201ENST00000623210 18662 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AL592437.2-201ENST00000421655 2434 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC135352.1-201ENST00000506173 1418 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 AC010928.1-201ENST00000592477 1447 ntBASIC4.46□□□□□ -1.7
VPS4AQ9UN37 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VPS4AQ9UN37 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL590240.1-201ENST00000334118 313 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RNU6-984P-201ENST00000363236 109 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RNU1-82P-201ENST00000390851 165 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RNU6-192P-201ENST00000391253 100 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC007066.1-201ENST00000392902 381 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL590762.2-201ENST00000395798 571 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RPL23AP48-201ENST00000406913 488 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RNU2-21P-201ENST00000410368 188 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RN7SKP142-201ENST00000411236 328 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL133384.1-201ENST00000412744 351 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RPL21P108-201ENST00000413857 481 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL592293.2-201ENST00000422292 996 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RPL23AP1-201ENST00000428990 471 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 ZYG11AP1-201ENST00000430329 837 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 BMS1P19-201ENST00000433925 393 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 MTND4P6-201ENST00000438297 472 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC092427.1-201ENST00000439177 601 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC122718.1-201ENST00000439448 744 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.45□□□□□ -1.7
VPS4AQ9UN37 EEF1E1P1-201ENST00000446998 430 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 ST13P20-201ENST00000447996 1065 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 EPS15P1-201ENST00000448836 336 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AL162591.2-201ENST00000449634 317 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 RNA5SP269-201ENST00000459032 137 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC097493.1-201ENST00000463958 372 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 FAM133DP-201ENST00000464802 691 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC010618.1-201ENST00000469924 477 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC109327.1-201ENST00000471666 403 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 MTND6P6-201ENST00000478031 263 ntBASIC4.45□□□□□ -1.7
VPS4AQ9UN37 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 127.2 ms