Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 CR383658.2-201ENST00000547576 1525 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.71□□□□□ -1.65
DKK3Q9UBP4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 Y_RNA.25-201ENST00000362528 102 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RNA5SP505-201ENST00000364748 108 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 Z98745.1-201ENST00000402553 494 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 Y_RNA.604-201ENST00000410574 102 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RNU2-66P-201ENST00000410650 161 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 SLC44A3-AS1-205ENST00000424505 612 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC010975.2-201ENST00000427781 588 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 MTND1P1-201ENST00000445453 368 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 EPS15P1-201ENST00000448836 336 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AL645939.1-201ENST00000453429 797 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RPL18AP17-201ENST00000455326 198 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RPS4XP15-201ENST00000489210 795 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RPL23AP72-201ENST00000492447 435 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RN7SL604P-201ENST00000492589 296 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RPL37P25-201ENST00000507308 276 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC239860.2-201ENST00000525886 270 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 GTF2IP22-201ENST00000554443 182 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 PSMB7P1-201ENST00000556349 514 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC136619.2-201ENST00000563361 631 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 MTND1P15-201ENST00000579262 949 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC091805.2-201ENST00000603848 235 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RNU6-88P-201ENST00000606801 100 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC108747.1-201ENST00000609508 535 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC123768.4-201ENST00000616244 701 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC116563.2-201ENST00000624751 535 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 OR2L1P-202ENST00000641567 1023 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 ZNF137P-201ENST00000456718 1920 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 MTCO1P23-201ENST00000415223 1526 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 AC135352.1-201ENST00000506173 1418 ntBASIC4.71□□□□□ -1.66
DKK3Q9UBP4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.71□□□□□ -1.66
DKK3Q9UBP4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 MIR448-201ENST00000362131 111 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 Y_RNA.126-201ENST00000363382 111 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RNU6-501P-201ENST00000364072 100 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RNU1-85P-201ENST00000364127 164 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RNU6-115P-201ENST00000364310 107 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RNU6-1042P-201ENST00000384204 107 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RPL23AP29-201ENST00000397284 453 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AL049693.1-201ENST00000402760 611 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 MTCO3P31-201ENST00000405526 789 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RNU2-65P-201ENST00000410162 185 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RN7SKP33-201ENST00000410942 340 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 GSTM3P2-201ENST00000412746 530 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 FCF1P2-201ENST00000415284 583 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AC092634.6-201ENST00000418558 192 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 CYP4F29P-201ENST00000420685 446 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 MTND1P28-201ENST00000435623 950 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AC104651.2-201ENST00000447549 528 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AL162591.2-201ENST00000449634 317 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 SLC31A1P1-201ENST00000451221 567 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 CEACAMP6-201ENST00000452007 574 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 DNAJC19P1-201ENST00000455312 319 ntBASIC4.7□□□□□ -1.66
DKK3Q9UBP4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
DKK3Q9UBP4 RPL30P9-201ENST00000465586 330 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms