Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC009804.1-201ENST00000400949 179 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AL353193.1-201ENST00000421444 268 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 MED13P1-201ENST00000428342 171 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 USP9YP9-201ENST00000429406 715 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 RPS27P18-201ENST00000431701 247 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC005094.1-201ENST00000440420 368 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC019185.1-201ENST00000442718 389 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 TDGF1P1-201ENST00000445734 527 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 DDX3P2-201ENST00000446138 111 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 DPPA3P1-201ENST00000448050 469 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 RAD23BP3-201ENST00000454157 1152 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 RNU6-261P-201ENST00000459506 102 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 NDUFB5P1-201ENST00000508134 564 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 HMGB1P41-201ENST00000520234 440 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AP004371.1-201ENST00000525240 214 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC123904.3-201ENST00000547218 814 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 MRPS21P7-201ENST00000566937 238 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC012182.1-201ENST00000570133 895 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 OR1F2P-201ENST00000570470 933 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 MIR4443-201ENST00000585052 53 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AF038458.1-201ENST00000588406 262 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 XIAPP1-201ENST00000603162 600 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 TUG1_2.1-201ENST00000614234 87 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 MIR6837-201ENST00000620884 64 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC099654.14-201ENST00000638599 341 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AL391684.1-202ENST00000641293 1636 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 AC004076.2-201ENST00000620532 3323 ntBASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
TRAIPQ9BWF2 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AP004607.3-201ENST00000530354 3915 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 Y_RNA.88-201ENST00000363029 99 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 MIR558-201ENST00000384920 94 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 MIR1-2-201ENST00000384961 85 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 MIR105-2-201ENST00000385083 81 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 USP9YP6-201ENST00000413550 854 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 JKAMPP1-201ENST00000413804 919 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC244098.2-201ENST00000422068 99 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AL162389.1-201ENST00000449233 177 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 MTND3P10-201ENST00000450967 341 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC008481.1-201ENST00000463278 396 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC083798.1-201ENST00000472671 131 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 RPS27AP1-201ENST00000475545 471 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 RN7SL799P-201ENST00000475891 298 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 VN1R104P-201ENST00000505115 1009 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AC008752.3-201ENST00000588113 712 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 SDR42E1P1-201ENST00000611327 477 ntBASIC6.15□□□□□ -1.42
TRAIPQ9BWF2 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms