Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA3P55318 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA3P55318 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA3P55318 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA3P55318 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA3P55318 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.3□□□□□ -2.04
FOXA3P55318 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
FOXA3P55318 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P75-201ENST00000396599 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC110754.1-201ENST00000399740 601 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P28-201ENST00000401418 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC2.3□□□□□ -2.04
FOXA3P55318 AL592114.1-201ENST00000403842 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AL590004.2-201ENST00000404787 371 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RNA5SP129-201ENST00000410276 118 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RNU6-1077P-201ENST00000410506 102 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 BX323014.1-201ENST00000412876 237 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA3P55318 AL451074.5-201ENST00000415894 435 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AL807761.1-201ENST00000417622 171 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 BTF3P9-201ENST00000418784 283 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P110-201ENST00000433345 446 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC122718.1-201ENST00000439448 744 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 XKRYP6-201ENST00000440468 1116 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 XKRYP3-201ENST00000442113 1116 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC069540.1-201ENST00000446320 988 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 RPL26P28-201ENST00000451325 435 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 BX276092.4-201ENST00000452056 248 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 HMGB1P26-201ENST00000452520 628 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P39-201ENST00000463605 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC011979.1-201ENST00000472300 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPS17P11-201ENST00000474297 293 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P93-201ENST00000480465 489 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RN7SL499P-201ENST00000481141 276 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC233702.1-201ENST00000482905 502 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC087190.1-201ENST00000484462 480 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC093591.1-201ENST00000491435 481 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P129-201ENST00000491732 478 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RPL21P16-201ENST00000495531 483 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC021678.1-201ENST00000505195 936 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC034244.2-201ENST00000514668 858 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 RNU6-1308P-201ENST00000516817 103 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA3P55318 AP000857.1-201ENST00000532151 543 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 OR8R1P-201ENST00000543943 764 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 MEG8-215ENST00000555354 469 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 ZNF415P1-201ENST00000582279 1166 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA3P55318 AC023043.3-201ENST00000593113 385 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 DUXAP4-201ENST00000603046 613 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC073657.2-201ENST00000605661 303 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC015849.2-201ENST00000605738 409 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 AC107871.2-201ENST00000612894 502 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA3P55318 AC092447.7-201ENST00000422212 1621 ntBASIC2.3□□□□□ -2.04
FOXA3P55318 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.3□□□□□ -2.04
FOXA3P55318 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
FOXA3P55318 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
FOXA3P55318 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA3P55318 GABRG2-229ENST00000641017 3628 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA3P55318 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
FOXA3P55318 AL049737.1-201ENST00000413920 1403 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AP002907.1-201ENST00000606361 1430 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 OR1S2-201ENST00000302592 978 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 DEFB109C-201ENST00000382575 264 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 DEFB109B-201ENST00000382656 264 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 SNORA56-201ENST00000383966 129 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 RNU6-244P-201ENST00000391028 104 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
FOXA3P55318 RNA5SP492-201ENST00000411330 114 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 HMGN1P24-201ENST00000412282 298 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 RPS15AP40-201ENST00000419621 391 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 USP9YP36-201ENST00000424581 829 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC2.29□□□□□ -2.04
FOXA3P55318 ATP6V0E1P4-201ENST00000427294 242 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 RPL7P2-201ENST00000427639 268 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AC073063.1-201ENST00000434352 607 ntBASIC2.29□□□□□ -2.04
FOXA3P55318 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms