Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.65□□□□□ -1.82
BRCA1P38398 snoU13.26-201ENST00000459452 105 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AC021205.2-201ENST00000480069 347 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.65□□□□□ -1.82
BRCA1P38398 ACTR6P1-201ENST00000514311 1104 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 MIR2114-201ENST00000516645 80 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 AC138761.3-201ENST00000579993 334 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AC026790.2-201ENST00000606282 430 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.65□□□□□ -1.82
BRCA1P38398 AL355816.1-201ENST00000607951 118 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC3.65□□□□□ -1.82
BRCA1P38398 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.65□□□□□ -1.82
BRCA1P38398 AC011472.4-201ENST00000615848 491 ntBASIC3.65□□□□□ -1.82
BRCA1P38398 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.65□□□□□ -1.82
BRCA1P38398 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
BRCA1P38398 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
BRCA1P38398 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
BRCA1P38398 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
BRCA1P38398 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
BRCA1P38398 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
BRCA1P38398 RNU6-851P-201ENST00000384565 107 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
BRCA1P38398 GSTA12P-201ENST00000402398 508 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 RAC1P3-201ENST00000416129 580 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 RPS26P40-201ENST00000435209 294 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AL354710.1-201ENST00000453641 246 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 RPL31P13-201ENST00000484151 370 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AC084033.1-201ENST00000550830 633 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.64□□□□□ -1.83
BRCA1P38398 PLCE1P1-201ENST00000622094 305 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AC019080.5-201ENST00000624891 757 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
BRCA1P38398 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
BRCA1P38398 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.64□□□□□ -1.83
BRCA1P38398 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.64□□□□□ -1.83
BRCA1P38398 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
BRCA1P38398 AL139039.1-201ENST00000401900 692 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 HMGB3P18-201ENST00000406327 590 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AC073136.2-201ENST00000417282 849 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.64□□□□□ -1.83
BRCA1P38398 DUTP6-201ENST00000425573 462 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.64□□□□□ -1.83
BRCA1P38398 RAD1P2-201ENST00000446414 663 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 FGF7P3-201ENST00000454645 303 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 snoU13.15-201ENST00000459407 104 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 RPL5P13-201ENST00000462840 709 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 ANXA2P1-201ENST00000505539 926 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
BRCA1P38398 MIR548Y-201ENST00000582739 110 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC3.64□□□□□ -1.83
BRCA1P38398 AL035413.2-201ENST00000604801 525 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 AP004607.9-201ENST00000618202 316 ntBASIC3.64□□□□□ -1.83
BRCA1P38398 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
BRCA1P38398 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.63□□□□□ -1.83
BRCA1P38398 RNU4-23P-201ENST00000362839 140 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.63□□□□□ -1.83
BRCA1P38398 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC3.63□□□□□ -1.83
BRCA1P38398 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.63□□□□□ -1.83
BRCA1P38398 XKRYP6-201ENST00000440468 1116 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 XKRYP3-201ENST00000442113 1116 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 AC010307.1-201ENST00000467206 836 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.63□□□□□ -1.83
BRCA1P38398 RNA5SP24-201ENST00000516478 95 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 SNORA31.21-201ENST00000517180 77 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.63□□□□□ -1.83
BRCA1P38398 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.63□□□□□ -1.83
BRCA1P38398 HMGB1P51-201ENST00000605166 638 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
BRCA1P38398 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
BRCA1P38398 AL359715.4-201ENST00000606629 1436 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 AL592437.2-201ENST00000421655 2434 ntBASIC3.63□□□□□ -1.83
BRCA1P38398 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
BRCA1P38398 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC3.62□□□□□ -1.83
BRCA1P38398 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC3.62□□□□□ -1.83
BRCA1P38398 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.62□□□□□ -1.83
BRCA1P38398 PCBP2P3-201ENST00000509726 843 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC3.62□□□□□ -1.83
BRCA1P38398 AL391597.1-201ENST00000618707 694 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
BRCA1P38398 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.62□□□□□ -1.83
BRCA1P38398 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
BRCA1P38398 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.62□□□□□ -1.83
BRCA1P38398 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
BRCA1P38398 RNU6-618P-201ENST00000363518 112 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 RNU4-31P-201ENST00000384211 141 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.62□□□□□ -1.83
BRCA1P38398 AC104058.1-201ENST00000448028 297 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 MTCO3P16-201ENST00000454456 754 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 OR4V1P-201ENST00000525394 1140 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 AC027176.1-201ENST00000560204 514 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 MIR4425-201ENST00000580572 84 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 AC244205.2-202ENST00000635781 342 ntBASIC3.62□□□□□ -1.83
BRCA1P38398 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
BRCA1P38398 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
BRCA1P38398 ZNF658B-202ENST00000615961 3375 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms