Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 BX323014.1-201ENST00000412876 237 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 HMGB3P23-201ENST00000414981 585 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 NUP35P2-201ENST00000416748 943 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 GTF2IP23-201ENST00000423746 351 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 BX890604.2-201ENST00000427883 474 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL353705.1-201ENST00000433468 480 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 CKS1BP5-201ENST00000434172 273 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 RPL7P59-201ENST00000447700 943 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 RPL26P28-201ENST00000451325 435 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 RPS26P21-201ENST00000475397 348 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 RPL32P34-201ENST00000486380 400 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC112198.1-201ENST00000505369 1220 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 HMGB3P15-201ENST00000507326 574 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 POU5F1P7-201ENST00000508759 541 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 FABP5P6-201ENST00000510588 409 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 SCARNA20.6-201ENST00000517251 106 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL163153.1-201ENST00000554223 283 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 MIR3690-201ENST00000580266 75 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC245128.3-201ENST00000594721 748 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL162713.1-201ENST00000604480 262 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC015802.5-201ENST00000607478 399 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 AL355365.1-201ENST00000616480 294 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HLA-DMBP28068 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.52□□□□□ -2.01
HLA-DMBP28068 SAGE4P-201ENST00000442271 3381 ntBASIC2.52□□□□□ -2.01
HLA-DMBP28068 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC117529.2-201ENST00000512159 2068 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 MTND5P1-201ENST00000445440 1375 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 SNORA7.2-201ENST00000364446 145 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 MIR421-201ENST00000365696 85 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 RNU6-1293P-201ENST00000384077 107 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 MIR23A-201ENST00000385245 73 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 KRR1P1-201ENST00000419430 803 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC244098.2-201ENST00000422068 99 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 TPTE2P6-202ENST00000445572 1007 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AL590399.6-201ENST00000446396 307 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC089999.1-201ENST00000460336 374 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 MTCO3P42-201ENST00000509488 518 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 MTCO3P39-201ENST00000514812 518 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 RNU1-143P-201ENST00000516296 146 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC007458.1-201ENST00000542812 373 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 NCAPGP2-201ENST00000557911 754 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 MIR5186-201ENST00000577504 120 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC015917.1-201ENST00000579654 510 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC090616.5-202ENST00000582111 297 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 MIR4506-201ENST00000584693 77 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 ACTR3BP1-201ENST00000605584 1247 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AL451074.6-201ENST00000608512 729 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 U1.23-201ENST00000610293 146 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC096577.2-201ENST00000611455 153 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 RNU1-68P-201ENST00000615382 146 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC107905.1-201ENST00000616204 426 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 U1.39-201ENST00000621562 146 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 RNU6-156P-201ENST00000621869 107 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 AC011978.2-201ENST00000569835 2054 ntBASIC2.51□□□□□ -2.01
HLA-DMBP28068 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HLA-DMBP28068 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC2.51□□□□□ -2.01
HLA-DMBP28068 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.5□□□□□ -2.01
HLA-DMBP28068 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
HLA-DMBP28068 AL355578.1-201ENST00000607405 1328 ntBASIC2.5□□□□□ -2.01
HLA-DMBP28068 OSBPL9P4-201ENST00000371707 1800 ntBASIC2.5□□□□□ -2.01
HLA-DMBP28068 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HLA-DMBP28068 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HLA-DMBP28068 NFIB-202ENST00000380924 840 ntTSL 5 BASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms