Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLGLA-201ENST00000465668 449 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 RN7SL432P-201ENST00000484057 298 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 RNU5F-8P-201ENST00000515941 111 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 RNU6-1219P-201ENST00000516143 112 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 IGHVII-49-1-201ENST00000521760 224 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 EEF1A1P17-201ENST00000547505 1275 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC112693.2-201ENST00000556538 232 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC091932.1-201ENST00000569381 427 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 MIR5701-3-201ENST00000578890 82 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 MIR5701-1-201ENST00000585138 82 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 MIR5701-2-201ENST00000615634 82 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC073592.6-201ENST00000624271 415 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AC127070.3-201ENST00000503695 3263 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 DACH2-207ENST00000510272 1764 ntTSL 2 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AL592148.3-201ENST00000608771 2646 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 AL121768.1-201ENST00000613917 2544 ntBASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.74□□□□□ -1.33
VPS9D1Q9Y2B5 MROH3P-201ENST00000435735 2676 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL596244.1-201ENST00000567068 3779 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 SNORD113-8-201ENST00000363497 74 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RNU6-290P-201ENST00000365212 101 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 Y_RNA.400-201ENST00000383963 111 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 Y_RNA.533-201ENST00000384596 114 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RNA5SP474-201ENST00000391234 90 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL139039.1-201ENST00000401900 692 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RNU2-52P-201ENST00000410680 190 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL445465.1-208ENST00000419709 506 ntTSL 3 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 PIGFP3-201ENST00000441918 722 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RPS7P4-201ENST00000444127 582 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC019084.1-201ENST00000457337 432 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 CREM-230ENST00000474931 626 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RPS27AP1-201ENST00000475545 471 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RN7SL561P-201ENST00000488553 281 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 SRI-210ENST00000490437 570 ntTSL 2 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RNU6-496P-201ENST00000516145 99 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 CARSP2-201ENST00000520688 277 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 MIR4800-201ENST00000537353 80 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC244034.2-201ENST00000562504 509 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC233702.2-202ENST00000562547 291 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC106785.4-201ENST00000569492 412 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 CTSLP2-201ENST00000580501 394 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL158827.2-201ENST00000602494 330 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL158032.1-201ENST00000605401 106 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC004241.2-201ENST00000614562 444 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC007347.2-201ENST00000623044 180 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 FP236240.3-201ENST00000623061 327 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC106782.7-201ENST00000624024 418 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC133555.5-201ENST00000624430 418 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC073488.3-201ENST00000631611 778 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AC243829.7-201ENST00000633081 225 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 AL691447.3-201ENST00000635020 330 ntBASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 ALB-209ENST00000503124 1741 ntTSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.73□□□□□ -1.33
VPS9D1Q9Y2B5 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms