Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AL583834.1-201ENST00000406943 343 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 RPL31P2-201ENST00000413849 377 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 FTH1P1-201ENST00000437933 532 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 ATP5C1P1-201ENST00000441945 895 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 H2AFZP6-201ENST00000444403 394 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 MRPL35P4-201ENST00000453682 566 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 RN7SL385P-201ENST00000468873 276 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 RPL7P5-201ENST00000471472 736 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC010306.1-201ENST00000523223 1117 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 MIR4504-201ENST00000577413 92 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AL009028.1-201ENST00000604895 802 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC090425.2-201ENST00000608818 501 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
VAPAQ9P0L0 MTND4P8-201ENST00000514997 1362 ntBASIC3.11□□□□□ -1.91
VAPAQ9P0L0 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AF117829.1-206ENST00000621883 3802 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 ZNF285B-201ENST00000561698 1767 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 SYF2P2-201ENST00000417620 583 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AL445584.1-201ENST00000431451 330 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 RPL21P110-201ENST00000433345 446 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 VDAC1P3-201ENST00000434069 851 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 HMGB1P12-201ENST00000438594 598 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 NF1P3-201ENST00000457709 450 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 RNU1-95P-201ENST00000516357 160 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 RNU1-128P-201ENST00000516704 160 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC010735.1-201ENST00000567305 1026 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC112230.1-201ENST00000604342 547 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC079610.2-201ENST00000604818 690 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC092184.1-201ENST00000625042 715 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC068724.3-201ENST00000625906 87 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 AC104446.1-201ENST00000613728 1321 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 MTND5P24-201ENST00000438892 1767 ntBASIC3.1□□□□□ -1.91
VAPAQ9P0L0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
VAPAQ9P0L0 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 RNA5SP124-201ENST00000362739 110 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 U3.6-201ENST00000363622 211 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 RNU6-1243P-201ENST00000364028 107 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 RNA5SP515-201ENST00000364570 118 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 RNU2-17P-201ENST00000410290 190 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 MTCYBP24-201ENST00000420387 1106 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 AC004865.1-201ENST00000442276 1003 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 HMGN2P16-201ENST00000456802 261 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 AC091959.2-201ENST00000477363 321 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 ACTR3P3-201ENST00000480448 893 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.09□□□□□ -1.91
VAPAQ9P0L0 AC245166.1-201ENST00000521012 253 ntBASIC3.09□□□□□ -1.91
VAPAQ9P0L0 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 133.7 ms