Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC021660.1-201ENST00000465006 554 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC010683.1-201ENST00000473673 378 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC110792.2-201ENST00000510278 224 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 RN7SKP298-201ENST00000515950 94 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 PAICSP4-201ENST00000517543 1253 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC005868.1-201ENST00000536421 331 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC009063.1-201ENST00000563342 702 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC136624.4-201ENST00000573044 370 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 BCRP9-201ENST00000605312 388 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 DCAF13P1-201ENST00000495256 1330 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 AC108467.2-201ENST00000617640 1597 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 OR14L1P-202ENST00000641545 3009 ntBASIC4.85□□□□□ -1.63
TDP1Q9NUW8 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.85□□□□□ -1.63
TDP1Q9NUW8 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC130650.2-201ENST00000618736 2403 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC011755.1-201ENST00000623763 2049 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 ELL2P4-201ENST00000446870 1376 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AL136164.3-201ENST00000624429 3978 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 RNU6-146P-201ENST00000384602 108 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AL024474.1-201ENST00000404655 591 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MIR1305-201ENST00000408300 86 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 CHIAP3-201ENST00000423668 1133 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC109583.1-201ENST00000432156 268 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 RPL23AP74-201ENST00000437246 471 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 USP9YP12-201ENST00000450481 570 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 BX322784.1-201ENST00000455793 1077 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AL136126.1-201ENST00000473603 402 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC068587.1-201ENST00000483613 781 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC025164.1-201ENST00000496249 478 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC138853.1-201ENST00000503549 823 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC022447.3-201ENST00000506865 495 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC093840.1-201ENST00000511599 336 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC024589.1-201ENST00000512207 263 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 COX6CP8-201ENST00000522620 226 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MTND4LP18-201ENST00000526864 291 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC068993.1-201ENST00000546724 589 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC008782.1-201ENST00000603386 430 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC090948.2-201ENST00000607363 564 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC138749.5-201ENST00000611461 208 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC116165.2-201ENST00000616705 206 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC104010.1-201ENST00000616889 150 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AP005019.3-201ENST00000620418 560 ntBASIC4.84□□□□□ -1.63
TDP1Q9NUW8 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
TDP1Q9NUW8 AC097504.1-201ENST00000515103 2415 ntBASIC4.84□□□□□ -1.64
TDP1Q9NUW8 AC104623.2-202ENST00000623477 4002 ntBASIC4.84□□□□□ -1.64
TDP1Q9NUW8 AC007529.1-201ENST00000418574 2178 ntBASIC4.84□□□□□ -1.64
TDP1Q9NUW8 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.64
TDP1Q9NUW8 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.84□□□□□ -1.64
TDP1Q9NUW8 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.64
TDP1Q9NUW8 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.64
TDP1Q9NUW8 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.83□□□□□ -1.64
TDP1Q9NUW8 OR11H4-201ENST00000315409 1082 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 156 ms