Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 USP12PY-201ENST00000427677 1064 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC091390.1-201ENST00000433904 331 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VMP1Q96GC9 PTGES3P5-201ENST00000455109 434 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 HMGB1P25-201ENST00000468402 607 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 RPS27AP1-201ENST00000475545 471 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 RNA5SP519-201ENST00000516480 119 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VMP1Q96GC9 MRPL49P2-201ENST00000521066 465 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AP003730.1-201ENST00000524605 285 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 OR8I1P-201ENST00000529291 931 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 PDCL2P2-201ENST00000533651 189 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 EEF1B2P4-201ENST00000551398 348 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL389895.1-201ENST00000554127 252 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL109766.1-201ENST00000555080 552 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AC069366.1-201ENST00000583159 838 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL590392.1-201ENST00000604960 446 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL512427.1-201ENST00000618593 349 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL157770.1-201ENST00000623049 439 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 CYP3A51P-201ENST00000633513 256 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VMP1Q96GC9 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
VMP1Q96GC9 OFD1P5Y-201ENST00000447585 2590 ntBASIC3.98□□□□□ -1.77
VMP1Q96GC9 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VMP1Q96GC9 AL049780.3-201ENST00000624612 1583 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AF117829.1-206ENST00000621883 3802 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VMP1Q96GC9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC118273.1-201ENST00000525324 3006 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 SUGT1P1-201ENST00000379514 476 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 RSL24D1P6-201ENST00000426934 401 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 RPL23AP89-201ENST00000439324 255 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 snoU109.4-201ENST00000458953 143 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC012181.1-201ENST00000479895 423 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC006517.1-201ENST00000480485 328 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 SNORA31.9-201ENST00000516429 84 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC068339.2-201ENST00000534395 618 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AP000619.3-201ENST00000535634 1127 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC006064.5-201ENST00000541782 248 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC087897.1-201ENST00000550134 156 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AL445435.1-201ENST00000604232 665 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC011816.2-201ENST00000607089 556 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 VIS1.1-201ENST00000610517 203 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC231759.1-201ENST00000616455 597 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AL445363.3-201ENST00000623080 671 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 AP003476.1-201ENST00000623984 516 ntBASIC3.97□□□□□ -1.77
VMP1Q96GC9 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VMP1Q96GC9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
VMP1Q96GC9 AL136520.1-201ENST00000600311 1322 ntBASIC3.96□□□□□ -1.77
VMP1Q96GC9 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VMP1Q96GC9 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VMP1Q96GC9 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VMP1Q96GC9 ANKRD36P1-201ENST00000344424 659 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 RNU6-1074P-201ENST00000383995 104 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 ARF4P3-201ENST00000397387 509 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 SNORA3C-201ENST00000408792 125 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 RPS7P9-201ENST00000414704 586 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 AC099677.1-201ENST00000420575 175 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 AC012065.2-201ENST00000421295 375 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VMP1Q96GC9 DUTP6-201ENST00000425573 462 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 DPRXP1-201ENST00000426312 460 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.96□□□□□ -1.78
VMP1Q96GC9 BTF3P10-201ENST00000433415 495 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
VMP1Q96GC9 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.96□□□□□ -1.78
VMP1Q96GC9 RPL23AP46-201ENST00000438548 490 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 MTND2P19-201ENST00000449129 1012 ntBASIC3.96□□□□□ -1.78
VMP1Q96GC9 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.96□□□□□ -1.78
VMP1Q96GC9 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms