Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MTCO2P25-201ENST00000447065 681 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC108463.1-201ENST00000450258 347 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ISCUP1-201ENST00000454451 448 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ANKRD26P4-201ENST00000455755 950 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 RPL7P18-201ENST00000478965 734 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC004263.1-201ENST00000479327 332 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 GAPDHP36-201ENST00000480688 918 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC079395.1-201ENST00000510981 262 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 RNA5SP73-201ENST00000516744 108 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 RNU6-1261P-201ENST00000517194 104 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 MTCYBP27-201ENST00000555160 670 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC068313.1-201ENST00000604028 1008 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC010201.1-201ENST00000605051 540 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 SNX18P1Y-201ENST00000616231 511 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AL607023.1-201ENST00000620045 248 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC131159.1-201ENST00000621854 213 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 MIR4278-201ENST00000636094 69 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC090337.1-201ENST00000579651 2074 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 DBF4P1-201ENST00000412976 1892 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC005539.1-201ENST00000443768 1479 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 OR4A15-201ENST00000314706 1035 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 SNORA63.1-201ENST00000362493 131 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 Y_RNA.111-201ENST00000363248 100 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 Y_RNA.169-201ENST00000363745 96 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 SDHCP2-201ENST00000398565 501 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RN7SKP267-201ENST00000410381 285 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 MTND4P22-201ENST00000413116 1169 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LUZP4P1-201ENST00000415420 344 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RPL7P34-201ENST00000433316 712 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 OR4C10P-201ENST00000434991 931 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 HSFY6P-201ENST00000445573 403 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RPL23AP24-201ENST00000458203 385 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 MTCO2P6-201ENST00000463134 685 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 RPL9P32-201ENST00000464118 620 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC092757.1-201ENST00000467293 467 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 MTCYBP17-201ENST00000503579 789 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AP003461.1-201ENST00000528866 78 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AP000790.1-201ENST00000528891 737 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC068831.4-201ENST00000556118 109 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC007687.1-201ENST00000602704 304 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC091946.2-201ENST00000606105 291 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC018816.2-201ENST00000621460 353 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC091905.2-201ENST00000623143 306 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 AC026634.1-201ENST00000634369 198 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 MIR1322-201ENST00000638013 71 ntBASIC3.69□□□□□ -1.82
PDLIM3Q53GG5 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms