Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMEM251P1-201ENST00000503717 318 ntBASIC3.57□□□□□ -1.84
CDX1P47902 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.57□□□□□ -1.84
CDX1P47902 AC010587.2-201ENST00000511727 448 ntBASIC3.57□□□□□ -1.84
CDX1P47902 USP9YP5-201ENST00000511770 630 ntBASIC3.57□□□□□ -1.84
CDX1P47902 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.57□□□□□ -1.84
CDX1P47902 AC023141.12-201ENST00000512399 199 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.57□□□□□ -1.84
CDX1P47902 MTCYBP41-201ENST00000528913 1123 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AP001781.1-201ENST00000530977 207 ntBASIC3.57□□□□□ -1.84
CDX1P47902 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CDX1P47902 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.57□□□□□ -1.84
CDX1P47902 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.57□□□□□ -1.84
CDX1P47902 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.57□□□□□ -1.84
CDX1P47902 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.57□□□□□ -1.84
CDX1P47902 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.57□□□□□ -1.84
CDX1P47902 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.57□□□□□ -1.84
CDX1P47902 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.57□□□□□ -1.84
CDX1P47902 AC084783.1-201ENST00000565846 910 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AL079343.1-201ENST00000572358 1771 ntBASIC3.57□□□□□ -1.84
CDX1P47902 MIR4715-201ENST00000584117 79 ntBASIC3.57□□□□□ -1.84
CDX1P47902 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.57□□□□□ -1.84
CDX1P47902 AC234772.3-201ENST00000602277 528 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AC068790.4-201ENST00000602474 263 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AL034351.1-201ENST00000605288 668 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AL158042.1-201ENST00000605338 460 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AC080013.4-201ENST00000607624 649 ntBASIC3.57□□□□□ -1.84
CDX1P47902 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.57□□□□□ -1.84
CDX1P47902 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.57□□□□□ -1.84
CDX1P47902 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.57□□□□□ -1.84
CDX1P47902 AC091925.2-201ENST00000625059 256 ntBASIC3.57□□□□□ -1.84
CDX1P47902 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CDX1P47902 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CDX1P47902 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CDX1P47902 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 AP000776.1-201ENST00000530032 1663 ntBASIC3.56□□□□□ -1.84
CDX1P47902 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 AC008033.1-201ENST00000216407 1162 ntBASIC3.56□□□□□ -1.84
CDX1P47902 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 FAM3C2-201ENST00000312214 681 ntBASIC3.56□□□□□ -1.84
CDX1P47902 RNA5SP189-201ENST00000364920 115 ntBASIC3.56□□□□□ -1.84
CDX1P47902 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.56□□□□□ -1.84
CDX1P47902 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 RNU6-629P-201ENST00000384061 103 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 RPL21P91-201ENST00000429231 479 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.56□□□□□ -1.84
CDX1P47902 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 ELOCP13-201ENST00000443934 329 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC005297.2-201ENST00000450430 606 ntBASIC3.56□□□□□ -1.84
CDX1P47902 RPL26P28-201ENST00000451325 435 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC009220.1-201ENST00000451614 275 ntBASIC3.56□□□□□ -1.84
CDX1P47902 ISCUP1-201ENST00000454451 448 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC079804.1-201ENST00000461922 436 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC090453.1-201ENST00000495560 436 ntBASIC3.56□□□□□ -1.84
CDX1P47902 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.56□□□□□ -1.84
CDX1P47902 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.56□□□□□ -1.84
CDX1P47902 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.56□□□□□ -1.84
CDX1P47902 AC024224.1-201ENST00000538284 609 ntBASIC3.56□□□□□ -1.84
CDX1P47902 EEF1B2P4-201ENST00000551398 348 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AL121603.1-201ENST00000553815 142 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.56□□□□□ -1.84
CDX1P47902 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.56□□□□□ -1.84
CDX1P47902 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.56□□□□□ -1.84
CDX1P47902 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.56□□□□□ -1.84
CDX1P47902 VN1R79P-201ENST00000593540 513 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.56□□□□□ -1.84
CDX1P47902 RPL12P25-202ENST00000598100 674 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC008782.1-201ENST00000603386 430 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC103881.1-201ENST00000603476 538 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AL356218.2-201ENST00000605264 187 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC128687.1-201ENST00000605304 619 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC011816.2-201ENST00000607089 556 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AP003392.5-201ENST00000607857 415 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AC092106.3-201ENST00000611308 722 ntBASIC3.56□□□□□ -1.84
CDX1P47902 AP000484.1-201ENST00000620067 1252 ntBASIC3.56□□□□□ -1.84
CDX1P47902 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CDX1P47902 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.56□□□□□ -1.84
CDX1P47902 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.56□□□□□ -1.84
CDX1P47902 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CDX1P47902 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CDX1P47902 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
CDX1P47902 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.55□□□□□ -1.84
CDX1P47902 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms