Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
CUX1P39880 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
CUX1P39880 AC105402.1-201ENST00000413336 545 ntBASIC4.58□□□□□ -1.68
CUX1P39880 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.58□□□□□ -1.68
CUX1P39880 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.58□□□□□ -1.68
CUX1P39880 HMGB1P18-201ENST00000438801 619 ntBASIC4.58□□□□□ -1.68
CUX1P39880 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.58□□□□□ -1.68
CUX1P39880 RPS6P2-201ENST00000454208 705 ntBASIC4.58□□□□□ -1.68
CUX1P39880 AC005351.1-201ENST00000511152 786 ntBASIC4.58□□□□□ -1.68
CUX1P39880 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.58□□□□□ -1.68
CUX1P39880 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
CUX1P39880 ATP5F1P7-201ENST00000567330 760 ntBASIC4.58□□□□□ -1.68
CUX1P39880 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.58□□□□□ -1.68
CUX1P39880 RNU1-35P-201ENST00000362782 153 ntBASIC4.57□□□□□ -1.68
CUX1P39880 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC4.57□□□□□ -1.68
CUX1P39880 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.57□□□□□ -1.68
CUX1P39880 PPIAP17-201ENST00000438507 471 ntBASIC4.57□□□□□ -1.68
CUX1P39880 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.57□□□□□ -1.68
CUX1P39880 AC133473.1-201ENST00000455173 299 ntBASIC4.57□□□□□ -1.68
CUX1P39880 CYCSP20-201ENST00000473154 315 ntBASIC4.57□□□□□ -1.68
CUX1P39880 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.57□□□□□ -1.68
CUX1P39880 AP001646.1-201ENST00000527936 915 ntBASIC4.57□□□□□ -1.68
CUX1P39880 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.57□□□□□ -1.68
CUX1P39880 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CUX1P39880 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
CUX1P39880 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CUX1P39880 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CUX1P39880 AC092593.1-201ENST00000515413 1815 ntBASIC4.57□□□□□ -1.68
CUX1P39880 AL138878.1-201ENST00000405131 347 ntBASIC4.56□□□□□ -1.68
CUX1P39880 ATF1P1-201ENST00000406040 927 ntBASIC4.56□□□□□ -1.68
CUX1P39880 AC245054.2-201ENST00000415639 319 ntBASIC4.56□□□□□ -1.68
CUX1P39880 RAC1P3-201ENST00000416129 580 ntBASIC4.56□□□□□ -1.68
CUX1P39880 TOMM20P4-201ENST00000427861 435 ntBASIC4.56□□□□□ -1.68
CUX1P39880 RPL23AP22-201ENST00000437556 453 ntBASIC4.56□□□□□ -1.68
CUX1P39880 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC4.56□□□□□ -1.68
CUX1P39880 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
CUX1P39880 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.56□□□□□ -1.68
CUX1P39880 AC243972.3-201ENST00000539655 198 ntBASIC4.56□□□□□ -1.68
CUX1P39880 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.56□□□□□ -1.68
CUX1P39880 U7.8-201ENST00000619968 63 ntBASIC4.56□□□□□ -1.68
CUX1P39880 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CUX1P39880 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CUX1P39880 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CUX1P39880 MTND4P10-201ENST00000446199 1363 ntBASIC4.56□□□□□ -1.68
CUX1P39880 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CUX1P39880 MIR512-1-201ENST00000384913 84 ntBASIC4.56□□□□□ -1.68
CUX1P39880 MIR504-201ENST00000385065 83 ntBASIC4.56□□□□□ -1.68
CUX1P39880 RPS4XP7-201ENST00000406274 780 ntBASIC4.56□□□□□ -1.68
CUX1P39880 RN7SKP285-201ENST00000410137 318 ntBASIC4.56□□□□□ -1.68
CUX1P39880 SMC4P1-201ENST00000414479 527 ntBASIC4.56□□□□□ -1.68
CUX1P39880 MRPS33P4-201ENST00000434892 317 ntBASIC4.56□□□□□ -1.68
CUX1P39880 SNORA64.4-201ENST00000516632 81 ntBASIC4.56□□□□□ -1.68
CUX1P39880 UBTFL10-201ENST00000528532 562 ntBASIC4.56□□□□□ -1.68
CUX1P39880 DNAJC19P3-201ENST00000594491 331 ntBASIC4.56□□□□□ -1.68
CUX1P39880 AC009039.2-201ENST00000624524 529 ntBASIC4.56□□□□□ -1.68
CUX1P39880 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.56□□□□□ -1.68
CUX1P39880 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.56□□□□□ -1.68
CUX1P39880 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CUX1P39880 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
CUX1P39880 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC4.55□□□□□ -1.68
CUX1P39880 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.55□□□□□ -1.68
CUX1P39880 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.55□□□□□ -1.68
CUX1P39880 UQCRHP3-201ENST00000451503 251 ntBASIC4.55□□□□□ -1.68
CUX1P39880 AL590639.1-201ENST00000456484 337 ntBASIC4.55□□□□□ -1.68
CUX1P39880 AP002884.2-201ENST00000471647 395 ntBASIC4.55□□□□□ -1.68
CUX1P39880 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.55□□□□□ -1.68
CUX1P39880 AC093663.2-201ENST00000484625 313 ntBASIC4.55□□□□□ -1.68
CUX1P39880 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.55□□□□□ -1.68
CUX1P39880 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.54□□□□□ -1.68
CUX1P39880 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CUX1P39880 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC4.54□□□□□ -1.68
CUX1P39880 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CUX1P39880 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CUX1P39880 RPL31P1-201ENST00000398116 372 ntBASIC4.54□□□□□ -1.68
CUX1P39880 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.54□□□□□ -1.68
CUX1P39880 RPL31P12-201ENST00000422587 358 ntBASIC4.54□□□□□ -1.68
CUX1P39880 CBX1P4-201ENST00000439415 457 ntBASIC4.54□□□□□ -1.68
CUX1P39880 SNRPGP5-201ENST00000456003 220 ntBASIC4.54□□□□□ -1.68
CUX1P39880 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC4.54□□□□□ -1.68
CUX1P39880 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC4.54□□□□□ -1.68
CUX1P39880 SNORD53-201ENST00000579969 78 ntBASIC4.54□□□□□ -1.68
CUX1P39880 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.54□□□□□ -1.68
CUX1P39880 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CUX1P39880 MTCO1P7-201ENST00000419523 1542 ntBASIC4.54□□□□□ -1.68
CUX1P39880 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CUX1P39880 AC008725.1-201ENST00000605123 2263 ntBASIC4.54□□□□□ -1.68
CUX1P39880 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
CUX1P39880 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CUX1P39880 DDX18P3-201ENST00000404856 2007 ntBASIC4.53□□□□□ -1.68
CUX1P39880 AMD1P2-201ENST00000412936 992 ntBASIC4.53□□□□□ -1.68
CUX1P39880 MTCO1P51-201ENST00000427672 1060 ntBASIC4.53□□□□□ -1.68
CUX1P39880 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.53□□□□□ -1.68
CUX1P39880 AL603825.1-201ENST00000438481 80 ntBASIC4.53□□□□□ -1.68
CUX1P39880 RPL23AP31-201ENST00000456160 467 ntBASIC4.53□□□□□ -1.68
CUX1P39880 ATP5F1P5-201ENST00000526403 760 ntBASIC4.53□□□□□ -1.68
CUX1P39880 AC008121.2-201ENST00000614647 523 ntBASIC4.53□□□□□ -1.68
CUX1P39880 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC4.53□□□□□ -1.68
CUX1P39880 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
CUX1P39880 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CUX1P39880 RNA5SP107-201ENST00000411358 122 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms