Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 AC007182.2-201ENST00000489251 402 ntBASIC4.81□□□□□ -1.64
MSX2P35548 RPL39P36-201ENST00000490784 156 ntBASIC4.81□□□□□ -1.64
MSX2P35548 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 RNU6-1281P-201ENST00000516223 105 ntBASIC4.81□□□□□ -1.64
MSX2P35548 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 OR5AN2P-201ENST00000534535 896 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 ARL2BPP2-201ENST00000550907 489 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL389895.1-201ENST00000554127 252 ntBASIC4.81□□□□□ -1.64
MSX2P35548 NDUFB4P11-201ENST00000560510 395 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL845331.3-202ENST00000562856 261 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AL157394.1-201ENST00000562983 1224 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.81□□□□□ -1.64
MSX2P35548 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.81□□□□□ -1.64
MSX2P35548 AC245014.2-201ENST00000603689 287 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AC246785.4-201ENST00000605374 287 ntBASIC4.81□□□□□ -1.64
MSX2P35548 PART1_1.1-201ENST00000611761 217 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AC009268.2-201ENST00000621925 457 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AC015908.5-201ENST00000623289 343 ntBASIC4.81□□□□□ -1.64
MSX2P35548 AC139792.3-201ENST00000623525 224 ntBASIC4.81□□□□□ -1.64
MSX2P35548 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
MSX2P35548 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSX2P35548 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSX2P35548 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSX2P35548 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSX2P35548 Y_RNA.142-201ENST00000363491 102 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SNORA2.3-201ENST00000383920 135 ntBASIC4.8□□□□□ -1.64
MSX2P35548 RNU6-878P-201ENST00000384578 110 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SNORA17A-201ENST00000391185 133 ntBASIC4.8□□□□□ -1.64
MSX2P35548 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 AL049693.1-201ENST00000402760 611 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AL603766.1-201ENST00000407763 664 ntBASIC4.8□□□□□ -1.64
MSX2P35548 MIR320C1-201ENST00000408566 88 ntBASIC4.8□□□□□ -1.64
MSX2P35548 RNU2-28P-201ENST00000410457 189 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC007390.1-201ENST00000415722 356 ntBASIC4.8□□□□□ -1.64
MSX2P35548 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX2P35548 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 AL353193.1-201ENST00000421444 268 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SDCBPP2-201ENST00000424643 885 ntBASIC4.8□□□□□ -1.64
MSX2P35548 RSU1P2-202ENST00000437884 485 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SUMO2P3-201ENST00000438311 288 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SNRPEP7-201ENST00000438350 220 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.8□□□□□ -1.64
MSX2P35548 RPL23AP16-201ENST00000441715 421 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 CALM1P1-201ENST00000442082 433 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 AC132479.1-201ENST00000449160 144 ntBASIC4.8□□□□□ -1.64
MSX2P35548 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX2P35548 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX2P35548 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 AC006390.1-201ENST00000508068 283 ntBASIC4.8□□□□□ -1.64
MSX2P35548 ENPP7P9-201ENST00000514456 627 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX2P35548 AC125611.2-201ENST00000551907 647 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC107954.1-201ENST00000565906 727 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.8□□□□□ -1.64
MSX2P35548 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.8□□□□□ -1.64
MSX2P35548 CKS1BP3-201ENST00000600888 237 ntBASIC4.8□□□□□ -1.64
MSX2P35548 NRBF2P5-201ENST00000603087 788 ntBASIC4.8□□□□□ -1.64
MSX2P35548 RNF138P2-201ENST00000603490 592 ntBASIC4.8□□□□□ -1.64
MSX2P35548 BNIP3P10-201ENST00000605360 577 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AP005432.2-201ENST00000608162 586 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AL442067.2-201ENST00000614033 363 ntBASIC4.8□□□□□ -1.64
MSX2P35548 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 AL732618.1-201ENST00000623251 301 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC019278.1-201ENST00000623516 479 ntBASIC4.8□□□□□ -1.64
MSX2P35548 SNORA17.5-201ENST00000630429 132 ntBASIC4.8□□□□□ -1.64
MSX2P35548 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.8□□□□□ -1.64
MSX2P35548 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.8□□□□□ -1.64
MSX2P35548 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms