Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AF186190.1-201ENST00000517470 480 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC025946.2-201ENST00000603398 234 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.47□□□□□ -1.85
COL5A3P25940 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
COL5A3P25940 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A3P25940 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.47□□□□□ -1.85
COL5A3P25940 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
COL5A3P25940 AC105402.1-201ENST00000413336 545 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 RAC1P3-201ENST00000416129 580 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC003685.2-201ENST00000422795 395 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 SETP10-201ENST00000424368 814 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.47□□□□□ -1.85
COL5A3P25940 AC078817.1-201ENST00000492623 435 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 Y_RNA.673-201ENST00000516306 88 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 RNA5SP148-201ENST00000516527 94 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.47□□□□□ -1.85
COL5A3P25940 MTND5P12-201ENST00000502851 1449 ntBASIC3.47□□□□□ -1.85
COL5A3P25940 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A3P25940 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A3P25940 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A3P25940 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.46□□□□□ -1.86
COL5A3P25940 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A3P25940 MIR512-1-201ENST00000384913 84 ntBASIC3.46□□□□□ -1.86
COL5A3P25940 HSPD1P16-201ENST00000402302 394 ntBASIC3.46□□□□□ -1.86
COL5A3P25940 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A3P25940 AP000936.3-201ENST00000438127 255 ntBASIC3.46□□□□□ -1.86
COL5A3P25940 AL513043.1-201ENST00000439124 535 ntBASIC3.46□□□□□ -1.86
COL5A3P25940 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.46□□□□□ -1.86
COL5A3P25940 RN7SKP43-201ENST00000516173 320 ntBASIC3.46□□□□□ -1.86
COL5A3P25940 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC3.46□□□□□ -1.86
COL5A3P25940 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
COL5A3P25940 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A3P25940 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
COL5A3P25940 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A3P25940 AL450263.2-201ENST00000439400 589 ntBASIC3.45□□□□□ -1.86
COL5A3P25940 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.45□□□□□ -1.86
COL5A3P25940 FDX1P2-201ENST00000450769 375 ntBASIC3.45□□□□□ -1.86
COL5A3P25940 UQCRHP3-201ENST00000451503 251 ntBASIC3.45□□□□□ -1.86
COL5A3P25940 CACYBPP2-201ENST00000453625 678 ntBASIC3.45□□□□□ -1.86
COL5A3P25940 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.45□□□□□ -1.86
COL5A3P25940 AP003122.3-201ENST00000526316 255 ntBASIC3.45□□□□□ -1.86
COL5A3P25940 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.45□□□□□ -1.86
COL5A3P25940 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A3P25940 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
COL5A3P25940 MIR26A1-201ENST00000362205 77 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 RN7SKP192-201ENST00000411291 327 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 CYCSP20-201ENST00000473154 315 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 OR5AK3P-201ENST00000527486 1297 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 AC087468.1-201ENST00000604365 630 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC3.44□□□□□ -1.86
COL5A3P25940 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 AC008264.2-201ENST00000610193 3731 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 MIR887-201ENST00000401258 79 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 AL512430.2-201ENST00000406786 339 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 RPL31P12-201ENST00000422587 358 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 RPS20P32-201ENST00000456044 356 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
COL5A3P25940 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.44□□□□□ -1.86
COL5A3P25940 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.44□□□□□ -1.86
COL5A3P25940 CDC27P2-201ENST00000425026 1922 ntBASIC3.44□□□□□ -1.86
COL5A3P25940 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
COL5A3P25940 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
COL5A3P25940 MIR1183-201ENST00000408856 89 ntBASIC3.43□□□□□ -1.86
COL5A3P25940 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.43□□□□□ -1.86
COL5A3P25940 AC004801.2-202ENST00000463559 283 ntBASIC3.43□□□□□ -1.86
COL5A3P25940 RN7SL330P-201ENST00000469709 307 ntBASIC3.43□□□□□ -1.86
COL5A3P25940 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.43□□□□□ -1.86
COL5A3P25940 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.43□□□□□ -1.86
COL5A3P25940 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
COL5A3P25940 AC078899.5-201ENST00000612475 178 ntBASIC3.43□□□□□ -1.86
COL5A3P25940 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.43□□□□□ -1.86
COL5A3P25940 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
COL5A3P25940 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
COL5A3P25940 RPL31P1-201ENST00000398116 372 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 SNORA79B-201ENST00000410557 148 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.42□□□□□ -1.86
COL5A3P25940 FTH1P1-201ENST00000437933 532 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AC010095.1-201ENST00000443543 144 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 SNRPGP5-201ENST00000456003 220 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AC107015.1-201ENST00000466902 747 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 UBL5P3-201ENST00000475112 231 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
COL5A3P25940 VWA8P1-201ENST00000510889 176 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AC008413.1-201ENST00000511864 177 ntBASIC3.42□□□□□ -1.86
COL5A3P25940 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.42□□□□□ -1.86
COL5A3P25940 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms