Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
SDC1P18827 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
SDC1P18827 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
SDC1P18827 MFSD8-236ENST00000641509 4050 ntBASIC3.43□□□□□ -1.86
SDC1P18827 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
SDC1P18827 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SDC1P18827 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
SDC1P18827 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 AC068647.1-201ENST00000489539 2265 ntBASIC3.42□□□□□ -1.86
SDC1P18827 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC1P18827 AC011978.2-201ENST00000569835 2054 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 SNORA70E-201ENST00000384492 135 ntBASIC3.42□□□□□ -1.86
SDC1P18827 FABP12P1-201ENST00000401911 322 ntBASIC3.42□□□□□ -1.86
SDC1P18827 BTBD10P2-201ENST00000404779 676 ntBASIC3.42□□□□□ -1.86
SDC1P18827 RSL24D1P1-201ENST00000404972 493 ntBASIC3.42□□□□□ -1.86
SDC1P18827 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 MTCO3P31-201ENST00000405526 789 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AL139098.1-201ENST00000407291 389 ntBASIC3.42□□□□□ -1.86
SDC1P18827 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 MTND4P22-201ENST00000413116 1169 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 AC004975.1-201ENST00000428733 208 ntBASIC3.42□□□□□ -1.86
SDC1P18827 RPS26P56-201ENST00000444468 240 ntBASIC3.42□□□□□ -1.86
SDC1P18827 NUTF2P7-201ENST00000453086 375 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 SNX5P1-201ENST00000505757 1041 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC048346.1-201ENST00000510247 144 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC093755.1-201ENST00000512950 1023 ntBASIC3.42□□□□□ -1.86
SDC1P18827 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.42□□□□□ -1.86
SDC1P18827 RNU6-1231P-201ENST00000517185 103 ntBASIC3.42□□□□□ -1.86
SDC1P18827 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
SDC1P18827 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 AC010376.1-201ENST00000522101 334 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AP001207.1-201ENST00000524051 481 ntBASIC3.42□□□□□ -1.86
SDC1P18827 MTCO3P15-201ENST00000526563 574 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC1P18827 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.42□□□□□ -1.86
SDC1P18827 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
SDC1P18827 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 YWHAQP7-201ENST00000603536 658 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC069431.2-201ENST00000604149 1099 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AL583856.2-201ENST00000606298 543 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AL391261.4-201ENST00000616012 481 ntBASIC3.42□□□□□ -1.86
SDC1P18827 AC022149.2-201ENST00000621061 203 ntBASIC3.42□□□□□ -1.86
SDC1P18827 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.42□□□□□ -1.86
SDC1P18827 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.42□□□□□ -1.86
SDC1P18827 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
SDC1P18827 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 MTND5P31-201ENST00000419366 1374 ntBASIC3.41□□□□□ -1.86
SDC1P18827 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
SDC1P18827 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 RNU5E-10P-201ENST00000363506 118 ntBASIC3.41□□□□□ -1.86
SDC1P18827 U3.15-201ENST00000365398 212 ntBASIC3.41□□□□□ -1.86
SDC1P18827 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SDC1P18827 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
SDC1P18827 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AC009237.5-201ENST00000414271 501 ntBASIC3.41□□□□□ -1.86
SDC1P18827 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AC013410.2-201ENST00000422627 201 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC233981.1-201ENST00000423224 461 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AL158071.1-201ENST00000430315 461 ntBASIC3.41□□□□□ -1.86
SDC1P18827 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 MRPL42P4-201ENST00000453267 443 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RPL6P9-201ENST00000466502 859 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RPL7L1P8-201ENST00000469911 741 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RPL21P103-201ENST00000479921 488 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
SDC1P18827 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.41□□□□□ -1.86
SDC1P18827 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.41□□□□□ -1.86
SDC1P18827 MTATP6P9-201ENST00000515039 680 ntBASIC3.41□□□□□ -1.86
SDC1P18827 HIGD1AP3-201ENST00000515857 278 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RNU6-276P-201ENST00000516114 96 ntBASIC3.41□□□□□ -1.86
SDC1P18827 RNU6-885P-201ENST00000516607 104 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.41□□□□□ -1.86
SDC1P18827 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 AP000926.4-201ENST00000527351 454 ntBASIC3.41□□□□□ -1.86
SDC1P18827 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SDC1P18827 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.41□□□□□ -1.86
SDC1P18827 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms