Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RPS7P5-201ENST00000441482 581 ntBASIC2.58□□□□□ -2
SDCBPO00560 PRDX3P3-201ENST00000447765 522 ntBASIC2.58□□□□□ -2
SDCBPO00560 RPL31P20-201ENST00000449593 360 ntBASIC2.58□□□□□ -2
SDCBPO00560 PTGES3P5-201ENST00000455109 434 ntBASIC2.58□□□□□ -2
SDCBPO00560 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.58□□□□□ -2
SDCBPO00560 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.58□□□□□ -2
SDCBPO00560 RN7SL863P-201ENST00000462370 296 ntBASIC2.58□□□□□ -2
SDCBPO00560 RPS4XP10-201ENST00000465034 731 ntBASIC2.58□□□□□ -2
SDCBPO00560 AC109925.1-201ENST00000478069 331 ntBASIC2.58□□□□□ -2
SDCBPO00560 RPL32P34-201ENST00000486380 400 ntBASIC2.58□□□□□ -2
SDCBPO00560 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC2.58□□□□□ -2
SDCBPO00560 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.58□□□□□ -2
SDCBPO00560 AC034244.2-201ENST00000514668 858 ntBASIC2.58□□□□□ -2
SDCBPO00560 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.58□□□□□ -2
SDCBPO00560 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.58□□□□□ -2
SDCBPO00560 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC2.58□□□□□ -2
SDCBPO00560 AC083760.1-201ENST00000589621 670 ntBASIC2.58□□□□□ -2
SDCBPO00560 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC2.58□□□□□ -2
SDCBPO00560 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.58□□□□□ -2
SDCBPO00560 AC069304.3-201ENST00000603938 1084 ntBASIC2.58□□□□□ -2
SDCBPO00560 AC113194.1-201ENST00000606037 500 ntBASIC2.58□□□□□ -2
SDCBPO00560 AC121761.2-201ENST00000617300 689 ntBASIC2.58□□□□□ -2
SDCBPO00560 AC099506.2-201ENST00000623074 221 ntBASIC2.58□□□□□ -2
SDCBPO00560 AC015726.3-201ENST00000624501 418 ntBASIC2.58□□□□□ -2
SDCBPO00560 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.58□□□□□ -2
SDCBPO00560 MTND5P7-201ENST00000413558 1798 ntBASIC2.58□□□□□ -2
SDCBPO00560 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
SDCBPO00560 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.57□□□□□ -2
SDCBPO00560 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.57□□□□□ -2
SDCBPO00560 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC2.57□□□□□ -2
SDCBPO00560 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.57□□□□□ -2
SDCBPO00560 SNORD15B-201ENST00000384714 146 ntBASIC2.57□□□□□ -2
SDCBPO00560 MIR591-201ENST00000385290 95 ntBASIC2.57□□□□□ -2
SDCBPO00560 HSPE1P26-201ENST00000405341 275 ntBASIC2.57□□□□□ -2
SDCBPO00560 MTCO1P45-201ENST00000431457 267 ntBASIC2.57□□□□□ -2
SDCBPO00560 CBX1P4-201ENST00000439415 457 ntBASIC2.57□□□□□ -2
SDCBPO00560 RPL21P18-201ENST00000469899 480 ntBASIC2.57□□□□□ -2
SDCBPO00560 RPL7P5-201ENST00000471472 736 ntBASIC2.57□□□□□ -2
SDCBPO00560 RN7SKP82-201ENST00000516786 223 ntBASIC2.57□□□□□ -2
SDCBPO00560 RNU6-1308P-201ENST00000516817 103 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC2.57□□□□□ -2
SDCBPO00560 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC2.57□□□□□ -2
SDCBPO00560 AC010198.2-201ENST00000550612 259 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.57□□□□□ -2
SDCBPO00560 OR4H12P-201ENST00000556269 907 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.57□□□□□ -2
SDCBPO00560 AL606834.2-201ENST00000602954 668 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC012119.1-201ENST00000603184 222 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.57□□□□□ -2
SDCBPO00560 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.57□□□□□ -2
SDCBPO00560 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC084757.4-201ENST00000616350 526 ntBASIC2.57□□□□□ -2
SDCBPO00560 AC138932.5-201ENST00000617759 563 ntBASIC2.57□□□□□ -2
SDCBPO00560 MIR7975-201ENST00000619350 68 ntBASIC2.57□□□□□ -2
SDCBPO00560 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.57□□□□□ -2
SDCBPO00560 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.57□□□□□ -2
SDCBPO00560 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
SDCBPO00560 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC2.57□□□□□ -2
SDCBPO00560 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.57□□□□□ -2
SDCBPO00560 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SDCBPO00560 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 RNA5SP72-201ENST00000364442 117 ntBASIC2.56□□□□□ -2
SDCBPO00560 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 MIR670-201ENST00000390142 98 ntBASIC2.56□□□□□ -2
SDCBPO00560 SNORD67-201ENST00000390833 111 ntBASIC2.56□□□□□ -2
SDCBPO00560 RPL31P1-201ENST00000398116 372 ntBASIC2.56□□□□□ -2
SDCBPO00560 RPL7P25-201ENST00000404151 721 ntBASIC2.56□□□□□ -2
SDCBPO00560 RN7SKP123-201ENST00000410732 291 ntBASIC2.56□□□□□ -2
SDCBPO00560 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 TEX41-204ENST00000423031 491 ntTSL 4 BASIC2.56□□□□□ -2
SDCBPO00560 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 YME1L1P1-201ENST00000429435 297 ntBASIC2.56□□□□□ -2
SDCBPO00560 AL353705.1-201ENST00000433468 480 ntBASIC2.56□□□□□ -2
SDCBPO00560 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 BUD31P2-201ENST00000449374 300 ntBASIC2.56□□□□□ -2
SDCBPO00560 AC092754.2-201ENST00000463506 460 ntBASIC2.56□□□□□ -2
SDCBPO00560 RN7SL601P-201ENST00000471221 293 ntBASIC2.56□□□□□ -2
SDCBPO00560 RPL7P23-201ENST00000493874 747 ntBASIC2.56□□□□□ -2
SDCBPO00560 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 AP004242.1-201ENST00000533701 349 ntBASIC2.56□□□□□ -2
SDCBPO00560 OR4T1P-201ENST00000554933 911 ntBASIC2.56□□□□□ -2
SDCBPO00560 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC2.56□□□□□ -2
SDCBPO00560 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC2.56□□□□□ -2
SDCBPO00560 MAGOH2P-202ENST00000584384 429 ntBASIC2.56□□□□□ -2
SDCBPO00560 CCDC58P3-201ENST00000590792 430 ntBASIC2.56□□□□□ -2
SDCBPO00560 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.56□□□□□ -2
SDCBPO00560 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.56□□□□□ -2
SDCBPO00560 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.56□□□□□ -2
SDCBPO00560 AC084035.1-201ENST00000634543 607 ntBASIC2.56□□□□□ -2
SDCBPO00560 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC2.56□□□□□ -2
SDCBPO00560 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SDCBPO00560 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms