Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 DBF4P1-201ENST00000412976 1892 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
ZNF540Q8NDQ6 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
ZNF540Q8NDQ6 CR381670.1-201ENST00000624291 1693 ntBASIC3.65□□□□□ -1.82
ZNF540Q8NDQ6 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.65□□□□□ -1.82
ZNF540Q8NDQ6 RNU6-989P-201ENST00000362756 107 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 RNU1-14P-201ENST00000362759 152 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 Y_RNA.126-201ENST00000363382 111 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 RN7SKP27-201ENST00000410684 333 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 USP9YP19-201ENST00000412165 485 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 MFSD13B-201ENST00000420133 1290 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC099677.1-201ENST00000420575 175 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 RPL17P49-201ENST00000443728 411 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AL500527.1-201ENST00000448532 255 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC010301.1-201ENST00000473936 355 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC017015.1-201ENST00000477387 286 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 RN7SL132P-201ENST00000478131 296 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AF213884.1-201ENST00000488102 463 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC008958.1-201ENST00000511047 682 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 OR8R1P-201ENST00000543943 764 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC092747.2-201ENST00000545069 983 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC084824.1-201ENST00000550917 1005 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC079148.1-201ENST00000565944 819 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC009948.4-201ENST00000604692 675 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AL034351.1-201ENST00000605288 668 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 BRDTP1-201ENST00000605735 677 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AC006329.2-201ENST00000611491 394 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 AL645568.2-201ENST00000432815 1337 ntBASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
ZNF540Q8NDQ6 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 ZNF849P-201ENST00000594711 1566 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-115P-201ENST00000364310 107 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 HSPE1P8-201ENST00000406997 288 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 KCTD10P1-201ENST00000434203 625 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 RPS20P24-201ENST00000457473 361 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 PRDX3P4-201ENST00000470828 747 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 MTND3P24-201ENST00000506306 329 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC087272.1-201ENST00000523624 533 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 PDCL2P2-201ENST00000533651 189 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AL391156.1-201ENST00000554965 554 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 NIFKP8-201ENST00000560500 874 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC022655.2-201ENST00000577280 318 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 XIAPP1-201ENST00000603162 600 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC114878.2-201ENST00000604863 1251 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AL110115.1-201ENST00000614396 364 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 AC091948.2-201ENST00000636510 279 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 MAPK10-362ENST00000641864 4484 ntBASIC3.64□□□□□ -1.83
ZNF540Q8NDQ6 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-619P-201ENST00000365146 108 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 HLFP1-201ENST00000402375 499 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 SNORA11-201ENST00000408789 128 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 RN7SKP53-201ENST00000411337 315 ntBASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.63□□□□□ -1.83
ZNF540Q8NDQ6 AL445183.3-201ENST00000414168 502 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms